8AKQ

180 A SynPspA rod after incubation with ATP

PDB DOI: https://doi.org/10.2210/pdb8AKQ/pdb
EM Map EMD-15489: EMDB EMDataResource

Classification: LIPID BINDING PROTEIN
Organism(s): Synechocystis sp. PCC 6803
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-07-31 Released: 2024-02-14
Deposition Author(s): Junglas, B., Hudina, E., Schoennenbeck, P., Ritter, I., Santiago-Schuebel, B., Huesgen, P., Sachse, C.
Funding Organization(s): European Union (EU)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.10 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Non-canonical ATPase activity drives PspA membrane constriction

Junglas, B., Hudina, E., Schoennenbeck, P., Ritter, I., Santiago-Schuebel, B., Huesgen, P., Sachse, C.

To be published.

Macromolecule Content

Total Structure Weight: 1,711.5 kDa
Atom Count: 96,240
Modelled Residue Count: 11,760
Deposited Residue Count: 14,760
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chloroplast membrane-associated 30 kD protein	A [auth 0] AA [auth S] AB [auth s] B [auth 1] BA [auth T] A [auth 0], AA [auth S], AB [auth s], B [auth 1], BA [auth T], BB [auth t], C [auth 2], CA [auth U], CB [auth u], D [auth 3], DA [auth V], DB [auth v], E [auth 4], EA [auth W], EB [auth w], F [auth 5], FA [auth X], FB [auth x], G [auth 6], GA [auth Y], GB [auth y], H [auth 7], HA [auth Z], HB [auth z], I [auth A], IA [auth a], J [auth B], JA [auth b], K [auth C], KA [auth c], L [auth D], LA [auth d], M [auth E], MA [auth e], N [auth F], NA [auth f], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], QA [auth i], R [auth J], RA [auth j], S [auth K], SA [auth k], T [auth L], TA [auth l], U [auth M], UA [auth m], V [auth N], VA [auth n], W [auth O], WA [auth o], X [auth P], XA [auth p], Y [auth Q], YA [auth q], Z [auth R], ZA [auth r]	246	Synechocystis sp. PCC 6803	Mutation(s): 0 Gene Names: im30
UniProt
Find proteins for P74717 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P74717 Go to UniProtKB: P74717
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P74717
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download Ideal Coordinates CCD File SDF format, chain BD [auth l] SDF format, chain CD [auth m] SDF format, chain DC [auth N] SDF format, chain HC [auth R] SDF format, chain JB [auth 1] SDF format, chain JC [auth T] SDF format, chain KD [auth u] SDF format, chain MC [auth W] SDF format, chain MD [auth w] SDF format, chain NC [auth X] SDF format, chain PB [auth 7] SDF format, chain VB [auth F] SDF format, chain WB [auth G] SDF format, chain YC [auth i] SDF format, chain AC [auth K] SDF format, chain AD [auth k] SDF format, chain BC [auth L] SDF format, chain CC [auth M] SDF format, chain DD [auth n] SDF format, chain EC [auth O] SDF format, chain ED [auth o] SDF format, chain FC [auth P] SDF format, chain FD [auth p] SDF format, chain GC [auth Q] SDF format, chain GD [auth q] SDF format, chain HD [auth r] SDF format, chain IB [auth 0] SDF format, chain IC [auth S] SDF format, chain ID [auth s] SDF format, chain JD [auth t] SDF format, chain KB [auth 2] SDF format, chain KC [auth U] SDF format, chain LB [auth 3] SDF format, chain LC [auth V] SDF format, chain LD [auth v] SDF format, chain MB [auth 4] SDF format, chain NB [auth 5] SDF format, chain ND [auth x] SDF format, chain OB [auth 6] SDF format, chain OC [auth Y] SDF format, chain OD [auth y] SDF format, chain PC [auth Z] SDF format, chain PD [auth z] SDF format, chain QB [auth A] SDF format, chain QC [auth a] SDF format, chain RB [auth B] SDF format, chain RC [auth b] SDF format, chain SB [auth C] SDF format, chain SC [auth c] SDF format, chain TB [auth D] SDF format, chain TC [auth d] SDF format, chain UB [auth E] SDF format, chain UC [auth e] SDF format, chain VC [auth f] SDF format, chain WC [auth g] SDF format, chain XB [auth H] SDF format, chain XC [auth h] SDF format, chain YB [auth I] SDF format, chain ZB [auth J] SDF format, chain ZC [auth j] MOL2 format, chain BD [auth l] MOL2 format, chain CD [auth m] MOL2 format, chain DC [auth N] MOL2 format, chain HC [auth R] MOL2 format, chain JB [auth 1] MOL2 format, chain JC [auth T] MOL2 format, chain KD [auth u] MOL2 format, chain MC [auth W] MOL2 format, chain MD [auth w] MOL2 format, chain NC [auth X] MOL2 format, chain PB [auth 7] MOL2 format, chain VB [auth F] MOL2 format, chain WB [auth G] MOL2 format, chain YC [auth i] MOL2 format, chain AC [auth K] MOL2 format, chain AD [auth k] MOL2 format, chain BC [auth L] MOL2 format, chain CC [auth M] MOL2 format, chain DD [auth n] MOL2 format, chain EC [auth O] MOL2 format, chain ED [auth o] MOL2 format, chain FC [auth P] MOL2 format, chain FD [auth p] MOL2 format, chain GC [auth Q] MOL2 format, chain GD [auth q] MOL2 format, chain HD [auth r] MOL2 format, chain IB [auth 0] MOL2 format, chain IC [auth S] MOL2 format, chain ID [auth s] MOL2 format, chain JD [auth t] MOL2 format, chain KB [auth 2] MOL2 format, chain KC [auth U] MOL2 format, chain LB [auth 3] MOL2 format, chain LC [auth V] MOL2 format, chain LD [auth v] MOL2 format, chain MB [auth 4] MOL2 format, chain NB [auth 5] MOL2 format, chain ND [auth x] MOL2 format, chain OB [auth 6] MOL2 format, chain OC [auth Y] MOL2 format, chain OD [auth y] MOL2 format, chain PC [auth Z] MOL2 format, chain PD [auth z] MOL2 format, chain QB [auth A] MOL2 format, chain QC [auth a] MOL2 format, chain RB [auth B] MOL2 format, chain RC [auth b] MOL2 format, chain SB [auth C] MOL2 format, chain SC [auth c] MOL2 format, chain TB [auth D] MOL2 format, chain TC [auth d] MOL2 format, chain UB [auth E] MOL2 format, chain UC [auth e] MOL2 format, chain VC [auth f] MOL2 format, chain WC [auth g] MOL2 format, chain XB [auth H] MOL2 format, chain XC [auth h] MOL2 format, chain YB [auth I] MOL2 format, chain ZB [auth J] MOL2 format, chain ZC [auth j]	AC [auth K] AD [auth k] BC [auth L] BD [auth l] CC [auth M] AC [auth K], AD [auth k], BC [auth L], BD [auth l], CC [auth M], CD [auth m], DC [auth N], DD [auth n], EC [auth O], ED [auth o], FC [auth P], FD [auth p], GC [auth Q], GD [auth q], HC [auth R], HD [auth r], IB [auth 0], IC [auth S], ID [auth s], JB [auth 1], JC [auth T], JD [auth t], KB [auth 2], KC [auth U], KD [auth u], LB [auth 3], LC [auth V], LD [auth v], MB [auth 4], MC [auth W], MD [auth w], NB [auth 5], NC [auth X], ND [auth x], OB [auth 6], OC [auth Y], OD [auth y], PB [auth 7], PC [auth Z], PD [auth z], QB [auth A], QC [auth a], RB [auth B], RC [auth b], SB [auth C], SC [auth c], TB [auth D], TC [auth d], UB [auth E], UC [auth e], VB [auth F], VC [auth f], WB [auth G], WC [auth g], XB [auth H], XC [auth h], YB [auth I], YC [auth i], ZB [auth J], ZC [auth j]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain AC [auth K] Focus chain AD [auth k] Focus chain BC [auth L] Focus chain BD [auth l] Focus chain CC [auth M] Focus chain CD [auth m] Focus chain DC [auth N] Focus chain DD [auth n] Focus chain EC [auth O] Focus chain ED [auth o] Focus chain FC [auth P] Focus chain FD [auth p] Focus chain GC [auth Q] Focus chain GD [auth q] Focus chain HC [auth R] Focus chain HD [auth r] Focus chain IB [auth 0] Focus chain IC [auth S] Focus chain ID [auth s] Focus chain JB [auth 1] Focus chain JC [auth T] Focus chain JD [auth t] Focus chain KB [auth 2] Focus chain KC [auth U] Focus chain KD [auth u] Focus chain LB [auth 3] Focus chain LC [auth V] Focus chain LD [auth v] Focus chain MB [auth 4] Focus chain MC [auth W] Focus chain MD [auth w] Focus chain NB [auth 5] Focus chain NC [auth X] Focus chain ND [auth x] Focus chain OB [auth 6] Focus chain OC [auth Y] Focus chain OD [auth y] Focus chain PB [auth 7] Focus chain PC [auth Z] Focus chain PD [auth z] Focus chain QB [auth A] Focus chain QC [auth a] Focus chain RB [auth B] Focus chain RC [auth b] Focus chain SB [auth C] Focus chain SC [auth c] Focus chain TB [auth D] Focus chain TC [auth d] Focus chain UB [auth E] Focus chain UC [auth e] Focus chain VB [auth F] Focus chain VC [auth f] Focus chain WB [auth G] Focus chain WC [auth g] Focus chain XB [auth H] Focus chain XC [auth h] Focus chain YB [auth I] Focus chain YC [auth i] Focus chain ZB [auth J] Focus chain ZC [auth j] Interactions & Density Focus chain AC [auth K] Focus chain AD [auth k] Focus chain BC [auth L] Focus chain BD [auth l] Focus chain CC [auth M] Focus chain CD [auth m] Focus chain DC [auth N] Focus chain DD [auth n] Focus chain EC [auth O] Focus chain ED [auth o] Focus chain FC [auth P] Focus chain FD [auth p] Focus chain GC [auth Q] Focus chain GD [auth q] Focus chain HC [auth R] Focus chain HD [auth r] Focus chain IB [auth 0] Focus chain IC [auth S] Focus chain ID [auth s] Focus chain JB [auth 1] Focus chain JC [auth T] Focus chain JD [auth t] Focus chain KB [auth 2] Focus chain KC [auth U] Focus chain KD [auth u] Focus chain LB [auth 3] Focus chain LC [auth V] Focus chain LD [auth v] Focus chain MB [auth 4] Focus chain MC [auth W] Focus chain MD [auth w] Focus chain NB [auth 5] Focus chain NC [auth X] Focus chain ND [auth x] Focus chain OB [auth 6] Focus chain OC [auth Y] Focus chain OD [auth y] Focus chain PB [auth 7] Focus chain PC [auth Z] Focus chain PD [auth z] Focus chain QB [auth A] Focus chain QC [auth a] Focus chain RB [auth B] Focus chain RC [auth b] Focus chain SB [auth C] Focus chain SC [auth c] Focus chain TB [auth D] Focus chain TC [auth d] Focus chain UB [auth E] Focus chain UC [auth e] Focus chain VB [auth F] Focus chain VC [auth f] Focus chain WB [auth G] Focus chain WC [auth g] Focus chain XB [auth H] Focus chain XC [auth h] Focus chain YB [auth I] Focus chain YC [auth i] Focus chain ZB [auth J] Focus chain ZC [auth j]