8ACX | pdb_00008acx

Pathogen effector of Zymoseptoria tritici: Zt-KP4

PDB DOI: https://doi.org/10.2210/pdb8ACX/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Zymoseptoria tritici
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-07-07 Released: 2024-01-17
Deposition Author(s): Hoh, F., Padilla, A., De Guillen, K.
Funding Organization(s): Centre National de la Recherche Scientifique (CNRS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.220 (Depositor), 0.230 (DCC)
R-Value Work:
0.171 (Depositor), 0.190 (DCC)
R-Value Observed:
0.172 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Zymoseptoria tritici effectors structurally related to killer proteins UmV-KP4 and UmV-KP6 are toxic to fungi, and define extended protein families in fungi

de Guillen, K., Mammri, L., Gracy, J., Padilla, A., Barthe, P., Hoh, F., Lahfa, M., Rouffet, J., Petit-Houdenot, Y., Kroj, T., Lebrun, M.H.

(2024) bioRxiv

DOI: https://doi.org/10.1101/2024.10.14.618152

Macromolecule Content

Total Structure Weight: 121.18 kDa
Atom Count: 6,773
Modeled Residue Count: 881
Deposited Residue Count: 1,152
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hce2 domain-containing protein	A, B, C, D, E A, B, C, D, E, F, G, H	144	Zymoseptoria tritici	Mutation(s): 0 Gene Names: ZT1E4_G10522
UniProt
Find proteins for A0A2H1H404 (Zymoseptoria tritici ST99CH_1E4) Explore A0A2H1H404 Go to UniProtKB: A0A2H1H404
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2H1H404
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.220 (Depositor), 0.230 (DCC)
R-Value Work: 0.171 (Depositor), 0.190 (DCC)
R-Value Observed: 0.172 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109.108	α = 90
b = 109.108	β = 90
c = 252.755	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-01-17

Deposition Author(s):

Funding Organization	Location	Grant Number
Centre National de la Recherche Scientifique (CNRS)	France	--

Revision History (Full details and data files)

Version 1.0: 2024-01-17
Type: Initial release
Version 1.1: 2024-11-20
Changes: Structure summary
Version 1.2: 2025-01-29
Changes: Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.