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Pathogen effector of Zymoseptoria tritici: Zt-KP4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model ITasser Itasser model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 sodium acetate and PEG 300
Crystal Properties Matthews coefficient Solvent content 2.39 48.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.108 α = 90 b = 109.108 β = 90 c = 252.755 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2018-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 1.0 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 46.44 97 0.999 14.9 9.25 86240
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.01 0.381
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Itasser model 1.9 46.44 81506 1042 93.91 0.1715 0.1709 0.1903 0.2199 0.2293 RANDOM 56.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.8 -3.8 7.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.084 r_dihedral_angle_4_deg 24.442 r_dihedral_angle_3_deg 16.633 r_dihedral_angle_1_deg 8.224 r_rigid_bond_restr 5.296 r_angle_refined_deg 1.889 r_angle_other_deg 1.317 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.084 r_dihedral_angle_4_deg 24.442 r_dihedral_angle_3_deg 16.633 r_dihedral_angle_1_deg 8.224 r_rigid_bond_restr 5.296 r_angle_refined_deg 1.889 r_angle_other_deg 1.317 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6616 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction