8ZPX | pdb_00008zpx

Structure of the wild-type Arabidopsis ABCB1 in the apo state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.

Wei, H.Zhu, H.Ying, W.Janssens, H.Kvasnica, M.Winne, J.M.Gao, Y.Friml, J.Ma, Q.Tan, S.Liu, X.Russinova, E.Sun, L.

(2025) Plant Commun 6: 101181-101181

  • DOI: https://doi.org/10.1016/j.xplc.2024.101181
  • Primary Citation of Related Structures:  
    8ZPX, 8ZPZ, 8ZQ4

  • PubMed Abstract: 

    Brassinosteroids (BRs) are steroidal phytohormones indispensable for plant growth, development, and responses to environmental stresses. The export of bioactive BRs to the apoplast is essential for BR signaling initiation, which requires binding of a BR molecule to the extracellular domains of the plasma membrane-localized receptor complex. We have previously shown that the Arabidopsis thaliana ATP-binding cassette (ABC) transporter ABCB19 functions as a BR exporter and, together with its close homolog ABCB1, positively regulates BR signaling. Here, we demonstrate that ABCB1 is another BR transporter. The ATP hydrolysis activity of ABCB1 can be stimulated by bioactive BRs, and its transport activity was confirmed in proteoliposomes and protoplasts. Structures of ABCB1 were determined in substrate-unbound (apo), brassinolide (BL)-bound, and ATP plus BL-bound states. In the BL-bound structure, BL is bound to the hydrophobic cavity formed by the transmembrane domain and triggers local conformational changes. Together, our data provide additional insights into ABC transporter-mediated BR export.


  • Organizational Affiliation
    • MOE Key Laboratory for Membraneless Organelles and Cellular Dynamics, Hefei National Research Center for Physical Sciences at the Microscale, Center for Advanced Interdisciplinary Science and Biomedicine of IHM, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230027, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter B family member 1A [auth B]1,286Arabidopsis thalianaMutation(s): 0 
Gene Names: ABCB1MDR1PGP1At2g36910T1J8.9
Membrane Entity: Yes 
UniProt
Find proteins for Q9ZR72 (Arabidopsis thaliana)
Explore Q9ZR72 
Go to UniProtKB:  Q9ZR72
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9ZR72
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.13_2998:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB37020103
National Natural Science Foundation of China (NSFC)China32322041; 32321001; 31900885

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-12
    Type: Initial release