Mechanism for drastic reduction in catalytic activity of Trp89Phe-mutated glutamate dehydrogenase revealed by cryoEM-sampling metastable conformation in action
Wakabayashi, T., Oide, M., Matsui, Y., Nakasako, M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glutamate dehydrogenase | 416 | Thermococcus profundus | Mutation(s): 1  Gene Names: gdhA, gdh EC: 1.4.1.3 | ![]() | |
UniProt | |||||
Find proteins for O74024 (Thermococcus profundus) Explore O74024  Go to UniProtKB:  O74024 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O74024 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAP (Subject of Investigation/LOI) Query on NAP | B [auth A] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N | |||
GLU (Subject of Investigation/LOI) Query on GLU | C [auth A] | GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-VKHMYHEASA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | RELION | 4.0 |
Funding Organization | Location | Grant Number |
---|---|---|
Japan Society for the Promotion of Science (JSPS) | Japan | jp13480214 |
Japan Society for the Promotion of Science (JSPS) | Japan | jp19204042 |
Japan Society for the Promotion of Science (JSPS) | Japan | jp22244054 |
Japan Society for the Promotion of Science (JSPS) | Japan | jp21H01050 |
Japan Society for the Promotion of Science (JSPS) | Japan | jp26800227 |
Japan Society for the Promotion of Science (JSPS) | Japan | 18J11653 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | jp15076210 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | jp20050030 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | jp22018027 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | jp23120525 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | jp25120725 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | jp15H01647 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | jp17H05891 |