8ZLL | pdb_00008zll

The apo state of hPAC with endogenous cholesterol


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Discovery and structural basis of endogenous and exogenous inhibitors of the proton-activated-chloride channel.

Zhang, H.Zhao, Z.Chen, X.Ma, Q.Zhen, W.Xu, Q.Wang, Y.He, B.Huang, Y.Xu, P.Xu, H.Lu, Z.Su, N.Yang, F.

(2025) Cell Rep 44: 115998-115998

  • DOI: https://doi.org/10.1016/j.celrep.2025.115998
  • Primary Citation of Related Structures:  
    8ZLB, 8ZLL, 9LHM, 9LI2

  • PubMed Abstract: 

    The proton-activated chloride (PAC) channel is a broadly expressed chloride channel that senses extracellular acidification, regulates endosomal acidification, and participates in many processes, including acid-induced cell death and cancer cell migration. However, the lack of specific modulators has limited our understanding of its function and therapeutic potential. Here, we discovered that endogenous cholesterol (CHL) partially inhibits PAC channel activation. Moreover, we identified a series of CHL analogs and structurally related dyes as full antagonists of the PAC channel, with deoxycholic acid (DCA) and Evans blue (EB) as their representative compounds. By combining cryo-electron microscopy (cryo-EM) and patch-clamp recordings, we revealed the distinct binding and inhibition mechanisms of DCA and EB on this channel. Moreover, in malignant osteosarcoma cells, where PAC channel expression is upregulated, EB inhibited the migration and invasion of these cells. Therefore, we identified DCA and EB as pharmacological tools for the PAC channel, which forms a basis for future drug discovery targeting this channel.


  • Organizational Affiliation
    • Liangzhu Laboratory, Zhejiang University Medical Center, Zhejiang University School of Medicine, Hangzhou, Zhejiang 311112, China; Kidney Disease Center of the First Affiliated Hospital and Department of Biophysics, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province 310058, China; Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Hangzhou, Zhejiang 310058, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proton-activated chloride channel
A, B, C
391Homo sapiensMutation(s): 0 
Gene Names: PACC1C1orf75TMEM206
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H813 (Homo sapiens)
Explore Q9H813 
Go to UniProtKB:  Q9H813
PHAROS:  Q9H813
GTEx:  ENSG00000065600 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H813
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32122040

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-23
    Type: Initial release
  • Version 1.1: 2025-07-30
    Changes: Data collection, Database references
  • Version 1.2: 2025-08-06
    Changes: Data collection, Database references