8Z9Y | pdb_00008z9y

Cryo-EM Structure of the Arabidopsis thaliana TIC Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insights into the chloroplast protein import in land plants.

Liang, K.Jin, Z.Zhan, X.Li, Y.Xu, Q.Xie, Y.Yang, Y.Wang, S.Wu, J.Yan, Z.

(2024) Cell 187: 5651-5664.e18

  • DOI: https://doi.org/10.1016/j.cell.2024.08.003
  • Primary Citation of Related Structures:  
    8XKU, 8XKV, 8Z9Y

  • PubMed Abstract: 

    Chloroplast proteins are imported via the translocon at the outer chloroplast membrane (TOC)-translocon at the inner chloroplast membrane (TIC) supercomplex, driven by an ATPase motor. The Ycf2-FtsHi complex has been identified as the chloroplast import motor. However, its assembly and cooperation with the TIC complex during preprotein translocation remain unclear. Here, we present the structures of the Ycf2-FtsHi and TIC complexes from Arabidopsis and an ultracomplex formed between them from Pisum. The Ycf2-FtsHi structure reveals a heterohexameric AAA+ ATPase motor module with characteristic features. Four previously uncharacterized components of Ycf2-FtsHi were identified, which aid in complex assembly and anchoring of the motor module at a tilted angle relative to the membrane. When considering the structures of the TIC complex and the TIC-Ycf2-FtsHi ultracomplex together, it becomes evident that the tilted motor module of Ycf2-FtsHi enables its close contact with the TIC complex, thereby facilitating efficient preprotein translocation. Our study provides valuable structural insights into the chloroplast protein import process in land plants.


  • Organizational Affiliation
    • Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, Zhejiang 310024, China; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang 310024, China; Institute of Biology, Westlake Institute for Advanced Study, Hangzhou, Zhejiang 310024, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein TIC 2141,786Arabidopsis thalianaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P56785 (Arabidopsis thaliana)
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Go to UniProtKB:  P56785
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UniProt GroupP56785
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein TIC 20-I, chloroplastic274Arabidopsis thalianaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q8GZ79 (Arabidopsis thaliana)
Explore Q8GZ79 
Go to UniProtKB:  Q8GZ79
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UniProt GroupQ8GZ79
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Actin T1-like protein98Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for Q6IDB3 (Arabidopsis thaliana)
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UniProt GroupQ6IDB3
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Protein TIC 100871Arabidopsis thalianaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q8LPR8 (Arabidopsis thaliana)
Explore Q8LPR8 
Go to UniProtKB:  Q8LPR8
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UniProt GroupQ8LPR8
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Protein TIC 56, chloroplastic527Arabidopsis thalianaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q7Y1W1 (Arabidopsis thaliana)
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UniProt GroupQ7Y1W1
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleusenvelope protein274Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for Q8VYY8 (Arabidopsis thaliana)
Explore Q8VYY8 
Go to UniProtKB:  Q8VYY8
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UniProt GroupQ8VYY8
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-27
    Type: Initial release
  • Version 1.1: 2025-07-23
    Changes: Data collection