8Z80

SLC19A2-Pyridoxine inward structure


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Substrate transport and drug interaction of human thiamine transporters SLC19A2/A3.

Li, P.Zhu, Z.Wang, Y.Zhang, X.Yang, C.Zhu, Y.Zhou, Z.Chao, Y.Long, Y.Gao, Y.Liu, S.Zhang, L.Gao, P.Qu, Q.

(2024) Nat Commun 15: 10924-10924

  • DOI: https://doi.org/10.1038/s41467-024-55359-8
  • Primary Citation of Related Structures:  
    8Z7R, 8Z7S, 8Z7T, 8Z7U, 8Z7V, 8Z7W, 8Z7X, 8Z7Y, 8Z7Z, 8Z80

  • PubMed Abstract: 

    Thiamine and pyridoxine are essential B vitamins that serve as enzymatic cofactors in energy metabolism, protein and nucleic acid biosynthesis, and neurotransmitter production. In humans, thiamine transporters SLC19A2 and SLC19A3 primarily regulate cellular uptake of both vitamins. Genetic mutations in these transporters, which cause thiamine and pyridoxine deficiency, have been implicated in severe neurometabolic diseases. Additionally, various prescribed medicines, including metformin and fedratinib, manipulate thiamine transporters, complicating the therapeutic effect. Despite their physiological and pharmacological significance, the molecular underpinnings of substrate and drug recognition remain unknown. Here we present ten cryo-EM structures of human thiamine transporters SLC19A3 and SLC19A2 in outward- and inward-facing conformations, complexed with thiamine, pyridoxine, metformin, fedratinib, and amprolium. These structural insights, combined with functional characterizations, illuminate the translocation mechanism of diverse chemical entities, and enhance our understanding of drug-nutrient interactions mediated by thiamine transporters.


  • Organizational Affiliation

    ENT Institute and Otorhinolaryngology Department of Eye & ENT Hospital, Institutes of Biomedical Sciences, Shanghai Key Laboratory of Medical Epigenetics, International Co-laboratory of Medical Epigenetics and Metabolism (Ministry of Science and Technology), Department of Systems Biology for Medicine, Fudan University, Shanghai, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thiamine transporter 1A [auth B]497Homo sapiensMutation(s): 0 
Gene Names: SLC19A2THT1TRMA
UniProt & NIH Common Fund Data Resources
Find proteins for O60779 (Homo sapiens)
Explore O60779 
Go to UniProtKB:  O60779
PHAROS:  O60779
GTEx:  ENSG00000117479 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO60779
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
UEG (Subject of Investigation/LOI)
Query on UEG

Download Ideal Coordinates CCD File 
B
4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol
C8 H11 N O3
LXNHXLLTXMVWPM-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-08
    Type: Initial release