8Z6D | pdb_00008z6d

Structure of transcriptional regulator TetR1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 
    0.251 (Depositor), 0.252 (DCC) 
  • R-Value Work: 
    0.202 (Depositor), 0.202 (DCC) 
  • R-Value Observed: 
    0.206 (Depositor) 

Starting Model: in silico
View more details

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and mechanistic insights into the transcriptional regulation of chromosomal T6SS by large conjugative plasmid-encoded TetRs in Acinetobacter baumannii.

He, W.Ouyang, Z.Zhang, J.Guo, X.Jiao, M.Qin, Q.He, X.Kang, L.Hwang, P.M.Zheng, F.Zhang, G.Wen, Y.

(2025) Nucleic Acids Res 53

  • DOI: https://doi.org/10.1093/nar/gkaf755
  • Primary Citation of Related Structures:  
    8Z6D, 8Z6E, 9LLQ

  • PubMed Abstract: 

    The type VI secretion system (T6SS) is a highly sophisticated nanomachine widely used by bacteria to achieve competitive advantage, important for survival and pathogenicity. In Acinetobacter baumannii, the large conjugative plasmid pAB3 encodes two TetR-family transcriptional regulators, TetR1 and TetR2, that play crucial roles in restricting T6SS function and promoting recipient survival after conjugation. Using X-ray crystallography, we demonstrate that the plasmid-encoded TetRs are structurally homologous but distinct in DNA sequence binding preferences, which we have also mapped out using chromatin immunoprecipitation and validated with electrophoretic mobility shift assay and isothermal titration calorimetry. Transcriptomics and functional studies demonstrated that TetR1 and TetR2 collaboratively downregulate most of the components of the T6SS, but they also impact metabolic pathways and biofilm formation, having an impact on cell morphology, invasiveness, and virulence in a mouse infection model. Taken together, this work provides structural and mechanistic insights into the widespread regulatory influence of plasmid-encoded TetR1 and TetR2 in A. baumannii, providing new insights into plasmid-chromosome cross-regulating pathways and enlightening antimicrobial drug discovery targeting A. baumannii.


  • Organizational Affiliation
    • Center for Microbiome Research of Med-X Institute, Department of Critical Care Medicine, Shaanxi Provincial Key Laboratory of Sepsis in Critical Care Medicine, The First Affiliated Hospital, Xi'an Jiaotong University, Xi'an 710061, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TetR/AcrR family transcriptional regulatorA,
B [auth C]
192Acinetobacter baumanniiMutation(s): 0 
Gene Names: F4T85_12205FJU42_20375HBK86_20415
UniProt
Find proteins for A0A3A1SW14 (Acinetobacter baumannii)
Explore A0A3A1SW14 
Go to UniProtKB:  A0A3A1SW14
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A3A1SW14
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free:  0.251 (Depositor), 0.252 (DCC) 
  • R-Value Work:  0.202 (Depositor), 0.202 (DCC) 
  • R-Value Observed: 0.206 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.17α = 90
b = 69.36β = 90
c = 112.44γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2025-04-23 
  • Deposition Author(s): He, W., Wen, Y.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China82072237

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-23
    Type: Initial release
  • Version 1.1: 2025-08-27
    Changes: Database references