8Z3T | pdb_00008z3t

Structure of P-98/N44

PDB DOI: https://doi.org/10.2210/pdb8Z3T/pdb

Classification: VIRAL PROTEIN
Organism(s): Human immunodeficiency virus 1
Mutation(s): Yes

Deposited: 2024-04-16 Released: 2025-10-22
Deposition Author(s): Liu, N., Qin, B.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free:
0.316 (Depositor), 0.314 (DCC)
R-Value Work:
0.248 (Depositor), 0.251 (DCC)
R-Value Observed:
0.255 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of P-98/N44

Liu, N., Qin, B.

To be published.

Macromolecule Content

Total Structure Weight: 25.72 kDa
Atom Count: 1,890
Modeled Residue Count: 215
Deposited Residue Count: 222
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Env polyprotein	A, B, C	45	Human immunodeficiency virus 1	Mutation(s): 1
UniProt
Find proteins for A0A1V0G0J3 (Human immunodeficiency virus type 1) Explore A0A1V0G0J3 Go to UniProtKB: A0A1V0G0J3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1V0G0J3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
P-98	D, E, F	29	Human immunodeficiency virus 1	Mutation(s): 0
UniProt
Find proteins for A0A2I6B8P1 (Human immunodeficiency virus type 1) Explore A0A2I6B8P1 Go to UniProtKB: A0A2I6B8P1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2I6B8P1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å
R-Value Free: 0.316 (Depositor), 0.314 (DCC)
R-Value Work: 0.248 (Depositor), 0.251 (DCC)
R-Value Observed: 0.255 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.915	α = 90
b = 35.97	β = 92.75
c = 107.113	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-10-22

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-10-22
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.