8Z3B | pdb_00008z3b

Crystal structure of GSTd2

PDB DOI: https://doi.org/10.2210/pdb8Z3B/pdb

Classification: TRANSFERASE
Organism(s): Plutella xylostella
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-04-15 Released: 2024-07-03
Deposition Author(s): Mo, X., Yao, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.230 (Depositor), 0.230 (DCC)
R-Value Work:
0.185 (Depositor), 0.190 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Characterization of a Plutella xylostella GZTd2, evolved in isothiocyanate detoxification

Mo, X., Yao, Y.

To be published.

Macromolecule Content

Total Structure Weight: 47.12 kDa
Atom Count: 3,582
Modeled Residue Count: 424
Deposited Residue Count: 424
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase delta	A, B	212	Plutella xylostella	Mutation(s): 0 Gene Names: PxGSTd
UniProt
Find proteins for A0A8S4G4Y6 (Plutella xylostella) Explore A0A8S4G4Y6 Go to UniProtKB: A0A8S4G4Y6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8S4G4Y6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.230 (Depositor), 0.230 (DCC)
R-Value Work: 0.185 (Depositor), 0.190 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.124	α = 90
b = 82.355	β = 90
c = 106.598	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-07-03

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32071476

Revision History (Full details and data files)

Version 1.0: 2024-07-03
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.