8Z10 | pdb_00008z10

Human beta-catenin crystal structure

• PDB DOI: https://doi.org/10.2210/pdb8Z10/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-04-10 Released: 2024-05-22 
• Deposition Author(s): Tim, F.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free: 
  0.275 (Depositor), 0.290 (DCC) 
• R-Value Work: 
  0.218 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.221 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of Beta-catenin

Tim, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 60.42 kDa 
• Atom Count: 3,772 
• Modeled Residue Count: 507 
• Deposited Residue Count: 549 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Catenin beta-1	A	549	Homo sapiens	Mutation(s): 0  Gene Names: CTNNB1, CTNNB, OK/SW-cl.35, PRO2286
UniProt & NIH Common Fund Data Resources
Find proteins for P35222 (Homo sapiens) Explore P35222  Go to UniProtKB:  P35222
PHAROS:  P35222 GTEx:  ENSG00000168036

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PRO	B [auth A], C [auth A]	PROLINE C5 H9 N O2 ONIBWKKTOPOVIA-BYPYZUCNSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free:  0.275 (Depositor), 0.290 (DCC) 
• R-Value Work:  0.218 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.221 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.947	α = 90
b = 103.054	β = 90
c = 185.883	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-22 
Deposition Author(s): Tim, F.

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Funding Organization	Location	Grant Number
Other private		--

Revision History  

• Version 1.0: 2024-05-22
  Type: Initial release