8YZQ | pdb_00008yzq

Toxascaris leonina galectin (Tl-gal) W77F/W212F oligomer

PDB DOI: https://doi.org/10.2210/pdb8YZQ/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Toxascaris leonina
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2024-04-08 Released: 2025-04-09
Deposition Author(s): Ha, M.S., Jang, S.B., Jeong, M.S.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.286 (Depositor), 0.287 (DCC)
R-Value Work:
0.234 (Depositor), 0.235 (DCC)
R-Value Observed:
0.237 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of mutant tl-galectin

Ha, M.S., Jang, S.B., Jeong, M.S.

To be published.

Macromolecule Content

Total Structure Weight: 251.34 kDa
Atom Count: 17,893
Modeled Residue Count: 2,139
Deposited Residue Count: 2,224
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Galectin	A, B, C, D, E A, B, C, D, E, F, G, H	278	Toxascaris leonina	Mutation(s): 2
UniProt
Find proteins for A0A1L1QJZ7 (Toxascaris leonina) Explore A0A1L1QJZ7 Go to UniProtKB: A0A1L1QJZ7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1L1QJZ7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.286 (Depositor), 0.287 (DCC)
R-Value Work: 0.234 (Depositor), 0.235 (DCC)
R-Value Observed: 0.237 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.519	α = 90.023
b = 82.154	β = 90.027
c = 114.589	γ = 90.012

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data collection
Coot	model building
HKL-2000	data scaling
HKL-2000	data reduction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-04-09

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2025-04-09
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.