8YQX | pdb_00008yqx

ASFV RNA polymerase-M1249L complex4


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Transcription regulation of African swine fever virus: dual role of M1249L.

Zhao, D.Wang, N.Feng, X.Zhang, Z.Xu, K.Zheng, T.Yang, Y.Li, X.Ou, X.Zhao, R.Rao, Z.Bu, Z.Chen, Y.Wang, X.

(2024) Nat Commun 15: 10058-10058

  • DOI: https://doi.org/10.1038/s41467-024-54461-1
  • Primary Citation of Related Structures:  
    8YQT, 8YQU, 8YQV, 8YQW, 8YQX, 8YQY, 8YQZ

  • PubMed Abstract: 

    African swine fever virus (ASFV), which poses significant risks to the global economy, encodes a unique host-independent transcription system. This system comprises an eight-subunit RNA polymerase (vRNAP), temporally expressed transcription factors and transcript associated proteins, facilitating cross-species transmission via intermediate host. The protein composition of the virion and the presence of transcription factors in virus genome suggest existence of distinct transcription systems during viral infection. However, the precise mechanisms of transcription regulation remain elusive. Through analyses of dynamic transcriptome, vRNAP-associated components and cell-based assay, the critical role of M1249L in viral transcription regulation has been highlighted. Atomic-resolution structures of vRNAP-M1249L supercomplex, exhibiting a variety of conformations, have uncovered the dual functions of M1249L. During early transcription, M1249L could serve as multiple temporary transcription factors with C-terminal domain acting as a switcher for activation/inactivation, while during late transcription it aids in the packaging of the transcription machinery. The structural and functional characteristics of M1249L underscore its vital roles in ASFV transcription, packaging, and capsid assembly, presenting novel opportunities for therapeutic intervention.


  • Organizational Affiliation
    • State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-reference Laboratory, National High Containment Facilities for Animal Diseases Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit1,450African swine fever virusMutation(s): 0 
EC: 2.7.7.6
UniProt
Find proteins for P42486 (African swine fever virus (strain Badajoz 1971 Vero-adapted))
Explore P42486 
Go to UniProtKB:  P42486
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42486
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
D339LB [auth F]339African swine fever virusMutation(s): 0 
UniProt
Find proteins for Q89907 (African swine fever virus (strain Badajoz 1971 Vero-adapted))
Explore Q89907 
Go to UniProtKB:  Q89907
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ89907
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
M1249LC [auth J]1,249African swine fever virusMutation(s): 0 
UniProt
Find proteins for Q65152 (African swine fever virus (strain Badajoz 1971 Vero-adapted))
Explore Q65152 
Go to UniProtKB:  Q65152
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ65152
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2024-11-06 
  • Deposition Author(s): Feng, X.Y.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-06
    Type: Initial release
  • Version 1.1: 2025-06-11
    Changes: Data collection, Database references
  • Version 1.2: 2025-07-02
    Changes: Data collection