8YQ7 | pdb_00008yq7

Acinetobacter baumannii membrane-bound lytic murein transglycosylase G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 
    0.273 (Depositor), 0.273 (DCC) 
  • R-Value Work: 
    0.238 (Depositor), 0.240 (DCC) 
  • R-Value Observed: 
    0.240 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Interdomain flexibility and putative active site was revealed by crystal structure of MltG from Acinetobacter baumannii.

Jang, H.Kim, C.M.Ha, H.J.Hong, E.Park, H.H.

(2024) Biochem Biophys Res Commun 727: 150318-150318

  • DOI: https://doi.org/10.1016/j.bbrc.2024.150318
  • Primary Citation of Related Structures:  
    8YQ7

  • PubMed Abstract: 

    MltG, positioned within the inner membrane of bacteria, functions as a lytic transglycosylase (LT) essential for integrating into the cell wall by cleaving the newly synthesized glycan strand, emphasizing its critical involvement in bacterial cell wall biosynthesis and remodeling. Current study reported the first structure of MltG family of LT. We have elucidated the structure of MltG from Acinetobacter baumannii (abMltG), a formidable superbug renowned for its remarkable antibiotic resistance. Our structural and biochemical investigations unveiled the presence of a flexible peptidoglycan (PG)-binding domain (PGD) within MltG family, which exists as a monomer in solution. Furthermore, we delineated the putative active site of abMltG via a combination of structural analysis and sequence comparison. This discovery enhances our comprehension of the transglycosylation process mediated by the MltG family, offering insights that could inform the development of novel antibiotics tailored to combat A. baumannii.


  • Organizational Affiliation
    • College of Pharmacy, Chung-Ang University, Seoul, 06974, Republic of Korea; Department of Global Innovative Drugs, Graduate School of Chung-Ang University, Seoul, 06974, Republic of Korea.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Endolytic murein transglycosylase
A, B, C, D, E
A, B, C, D, E, F
269Acinetobacter baumanniiMutation(s): 0 
Gene Names: mltGABUW_1023EA686_04105F2P40_13190HBK86_13510
EC: 4.2.2 (PDB Primary Data), 4.2.2.29 (UniProt)
UniProt
Find proteins for A0A7U3Y1Y4 (Acinetobacter baumannii (strain ACICU))
Explore A0A7U3Y1Y4 
Go to UniProtKB:  A0A7U3Y1Y4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7U3Y1Y4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free:  0.273 (Depositor), 0.273 (DCC) 
  • R-Value Work:  0.238 (Depositor), 0.240 (DCC) 
  • R-Value Observed: 0.240 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.86α = 90
b = 162.37β = 108.957
c = 79.11γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of--

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-26
    Type: Initial release
  • Version 1.1: 2025-10-15
    Changes: Database references