8Y5X | pdb_00008y5x

human NaS1 intermediate state 3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for the reaction cycle and transport mechanism of human Na + -sulfate cotransporter NaS1 (SLC13A1).

Chen, X.Zhang, Y.Yin, J.Liu, C.Xie, M.Wang, Y.Chen, M.Zhang, R.Yuan, X.Li, D.Chen, X.Gao, X.Cai, G.Zhang, S.Zhou, B.Yang, M.

(2024) Sci Adv 10: eado6778-eado6778

  • DOI: https://doi.org/10.1126/sciadv.ado6778
  • Primary Citation of Related Structures:  
    8Y5U, 8Y5W, 8Y5X, 8Y5Y, 8Y5Z

  • PubMed Abstract: 

    Sulfate (SO 4 2- ) is a pivotal inorganic anion with essential roles in mammalian physiology. NaS1, a member of solute carrier 13 family and divalent anion/sodium symporter family, functions as a Na + -sulfate cotransporter, facilitating sulfate (re)absorption across renal proximal tubule and small intestine epithelia. While previous studies have linked several human disorders to mutations in the NaS1 gene, its transport mechanism remains unclear. Here, we report the cryo-electron microscopy structures of five distinct conformations of the human NaS1 at resolutions of 2.7 to 3.3 angstroms, revealing the substrates recognition mechanism and the conformational change of NaS1 during the Na + -sulfate cotransport cycle. Our studies delineate the molecular basis of the detailed dynamic transport cycle of NaS1. These findings advance the current understanding of the Na + -sulfate cotransport mechanism, human sulfate (re)absorption, and the implications of disease-associated NaS1 mutations.


  • Organizational Affiliation
    • Ministry of Education Key Laboratory of Protein Science, Tsinghua-Peking Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier family 13 member 1
A, B
595Homo sapiensMutation(s): 0 
Gene Names: SLC13A1NAS1NASI1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BZW2 (Homo sapiens)
Explore Q9BZW2 
Go to UniProtKB:  Q9BZW2
PHAROS:  Q9BZW2
GTEx:  ENSG00000081800 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BZW2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2025-01-22 
  • Deposition Author(s): Zhang, S.S.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32030056

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-22
    Type: Initial release