8Y0Q | pdb_00008y0q

Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Discovery, recognized antigenic structures, and evolution of cross-serotype broadly neutralizing antibodies from porcine B-cell repertoires against foot-and-mouth disease virus.

Li, F.Wu, S.Lv, L.Huang, S.Zhang, Z.Zerang, Z.Li, P.Cao, Y.Bao, H.Sun, P.Bai, X.He, Y.Fu, Y.Yuan, H.Ma, X.Zhao, Z.Zhang, J.Wang, J.Wang, T.Li, D.Zhang, Q.He, J.Liu, Z.Lu, Z.Lei, D.Li, K.

(2024) PLoS Pathog 20: e1012623-e1012623

  • DOI: https://doi.org/10.1371/journal.ppat.1012623
  • Primary Citation of Related Structures:  
    8Y0Q, 8Y0R

  • PubMed Abstract: 

    It is a great challenge to isolate the broadly neutralizing antibodies (bnAbs) against foot-and-mouth disease virus (FMDV) due to its existence as seven distinct serotypes without cross-protection. Here, by vaccination of pig with FMDV serotypes O and A whole virus antigens, we obtained 10 bnAbs against serotypes O, A and/or Asia1 by dissecting 216 common clonotypes of two serotypes O and A specific porcine B-cell receptor (BCR) gene repertoires containing total 12720 B cell clones, indicating the induction of cross-serotype bnAbs after sequential vaccination with serotypes O and A antigens. The majority of porcine bnAbs (9/10) were derived from terminally differentiated B cells of different clonal lineages, which convergently targeted the conserved "RGDL" motif on structural protein VP1 of FMDV by mimicking receptor recognition to inhibit viral attachment to cells. Cryo-EM complex structures revealed that the other bnAb pOA-2 specifically targets a novel inter-pentamer antigen structure surrounding the viral three-fold axis, with a highly conserved determinant at residue 68 on VP2. This unique binding pattern enabled cross-serotype neutralization by destabilizing the viral particle. The evolutionary analysis of pOA-2 demonstrated its origin from an intermediate B-cell, emphasizing the crucial role of somatic hypermutations (SHMs) in balancing the breadth and potency of neutralization. However, excessive SHMs may deviate from the trajectory of broad neutralization. This study provides a strategy to uncover bnAbs against highly mutable pathogens and the cross-serotype antigenic structures to explore broadly protective FMDV vaccine.


  • Organizational Affiliation
    • State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, P. R. China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VP1 of capsid proteinA [auth 1]213Foot-and-mouth disease virus OMutation(s): 0 
UniProt
Find proteins for A0A1P8DYS7 (Foot-and-mouth disease virus serotype O)
Explore A0A1P8DYS7 
Go to UniProtKB:  A0A1P8DYS7
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1P8DYS7
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
VP2 of capsid proteinB [auth 2]218Foot-and-mouth disease virus OMutation(s): 0 
UniProt
Find proteins for J9PGT1 (Foot-and-mouth disease virus serotype O)
Explore J9PGT1 
Go to UniProtKB:  J9PGT1
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UniProt GroupJ9PGT1
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
VP3 of capsid proteinC [auth 3]220Foot-and-mouth disease virus OMutation(s): 0 
UniProt
Find proteins for A0A1C6ZW66 (Foot-and-mouth disease virus serotype O)
Explore A0A1C6ZW66 
Go to UniProtKB:  A0A1C6ZW66
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UniProt GroupA0A1C6ZW66
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
VP4 of capsid proteinD [auth 4]85Foot-and-mouth disease virus OMutation(s): 0 
UniProt
Find proteins for J9PGT1 (Foot-and-mouth disease virus serotype O)
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Go to UniProtKB:  J9PGT1
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UniProt GroupJ9PGT1
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
pOA2 VHE [auth H]123Sus scrofaMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
pOA2 VLF [auth L]109Sus scrofaMutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2024-10-09 
  • Deposition Author(s): Wu, S., Lei, D.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32373028
National Natural Science Foundation of China (NSFC)China32171300
National Natural Science Foundation of China (NSFC)China32072873
Other government2021YFD1800304
Other governmentlzujbky-2021-ct05
Other governmentNCTIP-MY23004

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-09
    Type: Initial release
  • Version 1.1: 2024-10-30
    Changes: Data collection
  • Version 1.2: 2024-11-13
    Changes: Data collection, Database references
  • Version 1.3: 2025-07-23
    Changes: Data collection