8XXI | pdb_00008xxi

Structure of y+LAT1 bound with Leu


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Structural basis for the substrate recognition and transport mechanism of the human y + LAT1-4F2hc transporter complex.

Dai, L.Zeng, Q.Zhang, T.Zhang, Y.Shi, Y.Li, Y.Xu, K.Huang, J.Wang, Z.Zhou, Q.Yan, R.

(2025) Sci Adv 11: eadq0558-eadq0558

  • DOI: https://doi.org/10.1126/sciadv.adq0558
  • Primary Citation of Related Structures:  
    8XXI, 8XYJ, 8YLP, 9KH5, 9KJU

  • PubMed Abstract: 

    Heteromeric amino acid transporters (HATs), including y + LAT1-4F2hc complex, are responsible for transporting amino acids across membranes, and mutations in y + LAT1 cause lysinuric protein intolerance (LPI), a hereditary disorder characterized by defective cationic amino acid transport. The relationship between LPI and specific mutations in y + LAT1 has yet to be fully understood. In this study, we characterized the function of y + LAT1-4F2hc complex in mammalian cells and determined the cryo-EM structures of the human y + LAT1-4F2hc complex in two distinct conformations: the apo state in an inward-open conformation and the native substrate-bound state in an outward-open conformation. Structural analysis suggests that Asp 243 in y + LAT1 plays a crucial role in coordination with sodium ion and substrate selectivity. Molecular dynamic (MD) simulations further revealed the different transport mechanism of cationic amino acids and neutral amino acids. These results provide important insights into the mechanisms of the substrate binding and working cycle of HATs.


  • Organizational Affiliation

    School of Medicine, Southern University of Science and Technology, Shenzhen, Guangdong Province, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Y+L amino acid transporter 1529Homo sapiensMutation(s): 0 
Gene Names: SLC7A7
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UM01 (Homo sapiens)
Explore Q9UM01 
Go to UniProtKB:  Q9UM01
PHAROS:  Q9UM01
GTEx:  ENSG00000155465 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UM01
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-22
    Type: Initial release
  • Version 2.0: 2025-03-19
    Type: Coordinate replacement
    Reason: Polymer geometry
    Changes: Atomic model, Data collection, Derived calculations, Structure summary
  • Version 2.1: 2025-04-02
    Changes: Data collection, Database references