8XWX | pdb_00008xwx

Crystal structure of FIS1-BAP31 complex from human


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 
    0.287 (Depositor), 0.290 (DCC) 
  • R-Value Work: 
    0.254 (Depositor), 0.260 (DCC) 
  • R-Value Observed: 
    0.256 (Depositor) 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of Fis1 and Bap31 provides information on protein-protein interactions at mitochondria-associated ER membranes.

Nguyen, M.D.Kim, Y.Bae, S.H.Kim, S.Yeo, H.K.Ha, N.C.Cho, G.Moon, S.Cho, K.H.Jang, H.Bong, S.M.Lee, B.I.

(2025) Commun Biol 8: 1161-1161

  • DOI: https://doi.org/10.1038/s42003-025-08625-4
  • Primary Citation of Related Structures:  
    8XWX

  • PubMed Abstract: 

    In eukaryotic cells, mitochondria and the endoplasmic reticulum (ER) form close contacts at mitochondria-associated ER membranes (MAMs), which are involved in diverse cellular processes. The outer mitochondrial membrane protein Fis1, known for its role in mitochondrial fission, has been reported to interact with the ER-resident protein Bap31. Here, we present crystal structures of the cytosolic domain of human Fis1 in two distinct conformations, along with a co-crystal structure of Fis1 bound to the C-terminal region of the Bap31_vDED domain. One Fis1 structure resembles monomeric yeast Fis1 and features a characteristic N-terminal "Fis1 arm" conformation, which may indicate an autoinhibitory function. In the co-complex, the Bap31_vDED region engages the convex surface of Fis1's tetratricopeptide repeat (TPR) domain. These findings provide structural insight into the interaction between Fis1 and Bap31 at ER-mitochondria contact sites.


  • Organizational Affiliation
    • Research Institute, National Cancer Center, Goyang-si, Gyeonggi, Republic of Korea.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
B-cell receptor-associated protein 31A [auth E],
C [auth G],
D,
E [auth F]
72Homo sapiensMutation(s): 0 
Gene Names: BCAP31BAP31
UniProt & NIH Common Fund Data Resources
Find proteins for P51572 (Homo sapiens)
Explore P51572 
Go to UniProtKB:  P51572
PHAROS:  P51572
GTEx:  ENSG00000185825 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP51572
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial fission 1 proteinB [auth A],
F [auth C],
G [auth B]
125Homo sapiensMutation(s): 0 
Gene Names: FIS1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3D6 (Homo sapiens)
Explore Q9Y3D6 
Go to UniProtKB:  Q9Y3D6
PHAROS:  Q9Y3D6
GTEx:  ENSG00000214253 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y3D6
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free:  0.287 (Depositor), 0.290 (DCC) 
  • R-Value Work:  0.254 (Depositor), 0.260 (DCC) 
  • R-Value Observed: 0.256 (Depositor) 
Space Group: C 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 104.632α = 90
b = 237.267β = 90
c = 90.622γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2018R1A5A2023127
National Research Foundation (NRF, Korea)Korea, Republic Of2019R1A2C1002545

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-15
    Type: Initial release
  • Version 1.1: 2025-08-13
    Changes: Database references, Structure summary
  • Version 1.2: 2025-08-20
    Changes: Database references