8XVN | pdb_00008xvn

Short-chain dehydrogenase/reductase6 (SDR6) from Antrodia camphorata

PDB DOI: https://doi.org/10.2210/pdb8XVN/pdb

Classification: OXIDOREDUCTASE
Organism(s): Taiwanofungus camphoratus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-01-15 Released: 2025-01-15
Deposition Author(s): Zhang, Y.Q., Zhang, M., Ye, M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.192 (Depositor), 0.193 (DCC)
R-Value Work:
0.164 (Depositor), 0.166 (DCC)
R-Value Observed:
0.165 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Short-chain dehydrogenase/reductase6 (SDR6) from Antrodia camphorata

Zhang, Y.Q., Zhang, M., Ye, M.

To be published.

Macromolecule Content

Total Structure Weight: 227.59 kDa
Atom Count: 14,570
Modeled Residue Count: 1,821
Deposited Residue Count: 2,160
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Short-chain dehydrogenases/reductase	A, B, C, D, E A, B, C, D, E, F, G, H	270	Taiwanofungus camphoratus	Mutation(s): 0 EC: 1.1.1.100
UniProt
Find proteins for A0A165BBH9 (Laetiporus sulphureus 93-53) Explore A0A165BBH9 Go to UniProtKB: A0A165BBH9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A165BBH9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.192 (Depositor), 0.193 (DCC)
R-Value Work: 0.164 (Depositor), 0.166 (DCC)
R-Value Observed: 0.165 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.41	α = 90
b = 133.46	β = 91.03
c = 94.221	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2025-01-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2025-01-15
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.