8XQD | pdb_00008xqd

The Crystal Structure of PTPRG from Biortus.

• PDB DOI: https://doi.org/10.2210/pdb8XQD/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: prokaryote coculture
• Mutation(s): No 


• Deposited: 2024-01-05 Released: 2024-03-06 
• Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Ju, C., Ni, C.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 
  0.277 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.215 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.218 (Depositor) 

Starting Model: experimental

Literature

The Crystal Structure of PTPRG from Biortus.

Wang, F., Cheng, W., Lv, Z., Ju, C., Ni, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 72.18 kDa 
• Atom Count: 4,840 
• Modeled Residue Count: 565 
• Deposited Residue Count: 626 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor-type tyrosine-protein phosphatase gamma	A, B	313	Homo sapiens	Mutation(s): 0  Gene Names: PTPRG, PTPG EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for P23470 (Homo sapiens) Explore P23470  Go to UniProtKB:  P23470
PHAROS:  P23470 GTEx:  ENSG00000144724

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free:  0.277 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.215 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.218 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.916	α = 90
b = 76.161	β = 90
c = 106.623	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-06 
Deposition Author(s): Wang, F., Cheng, W., Lv, Z., Ju, C., Ni, C.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-03-06
  Type: Initial release