8XP5 | pdb_00008xp5

The Crystal Structure of p53/BCL-xL fusion complex from Biortus.

• PDB DOI: https://doi.org/10.2210/pdb8XP5/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-01-03 Released: 2024-03-06 
• Deposition Author(s): Wang, F., Cheng, W., Yuan, Z., Lin, D., Bao, C.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 
  0.328 (Depositor), 0.330 (DCC) 
• R-Value Work: 
  0.255 (Depositor), 0.270 (DCC) 

Starting Model: experimental

Literature

The Crystal Structure of p53/BCL-xL fusion complex from Biortus.

Wang, F., Cheng, W., Yuan, Z., Lin, D., Bao, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 83.54 kDa 
• Atom Count: 5,051 
• Modeled Residue Count: 622 
• Deposited Residue Count: 746 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bcl-2-like protein 1,Cellular tumor antigen p53	A, B	373	Homo sapiens	Mutation(s): 0  Gene Names: BCL2L1, BCL2L, BCLX, TP53, P53
UniProt & NIH Common Fund Data Resources
Find proteins for P04637 (Homo sapiens) Explore P04637  Go to UniProtKB:  P04637
PHAROS:  P04637 GTEx:  ENSG00000141510
Find proteins for Q07817 (Homo sapiens) Explore Q07817  Go to UniProtKB:  Q07817
PHAROS:  Q07817 GTEx:  ENSG00000171552
UniProt Groups	Q07817P04637

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	C [auth A], D [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free:  0.328 (Depositor), 0.330 (DCC) 
• R-Value Work:  0.255 (Depositor), 0.270 (DCC) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.976	α = 90
b = 68.437	β = 112.356
c = 77.055	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-06 
Deposition Author(s): Wang, F., Cheng, W., Yuan, Z., Lin, D., Bao, C.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-03-06
  Type: Initial release