8XOQ | pdb_00008xoq

Human Calcium and Integrin Binding Protein 2 (CIB2) Fusion to TMC1 CBD-1 domain at 2.4 Angstroms resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 
    0.242 (Depositor), 0.245 (DCC) 
  • R-Value Work: 
    0.201 (Depositor), 0.206 (DCC) 
  • R-Value Observed: 
    0.203 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insights into calcium-dependent CIB2-TMC1 interaction in hair cell mechanotransduction.

Li, Y.Chen, J.Jiang, W.Ye, J.Zhang, X.Wang, C.

(2025) Commun Biol 8: 306-306

  • DOI: https://doi.org/10.1038/s42003-025-07761-1
  • Primary Citation of Related Structures:  
    8XOQ

  • PubMed Abstract: 

    Calcium- and integrin-binding protein 2 (CIB2) plays a crucial role in mechanoelectrical transduction (MET) in cochlear hair cells, particularly in modulating the function and localization of the core components of MET channels TMC1/2. CIB2, along with its homolog CIB3, interacts with TMC1/2 through two distinct sites. Here, our study unveils CIB2/3's role as a calcium sensor in its interaction with TMC1. Utilizing X-ray crystallography, we elucidate the high-resolution structure of the mammalian CIB2-TMC1 complex. Structural analyses reveal that cation-bound CIB2 forms a negatively charged surface that aligns with a positively charged surface on the TMC1 N-terminus. Moreover, our data suggest that Ca²⁺ modulates CIB2's interaction with both the N-terminal domain and the loop 1 region of TMC1, and that Ca²⁺-bound CIB2 is capable of simultaneously binding to both regions of TMC1. Critically, we examine pathogenic variants of CIB2 associated with hearing loss, discovering that these variants have differential impacts on CIB2's interactions with TMC1's dual binding sites, displaying diminished calcium-binding affinities for several of these CIB2 mutations. These findings provide a deeper understanding of the molecular mechanisms underlying CIB2 function and its implications in hearing loss, offering potential avenues for therapeutic interventions in deafness.


  • Organizational Affiliation
    • Department of Neurology, the First Affiliated Hospital of USTC, Center for Advanced Interdisciplinary Science and Biomedicine of IHM, Hefei National Research Center for Physical Sciences at the Microscale, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transmembrane channel-like protein 1,Calcium and integrin-binding family member 2
A, B
250Homo sapiensMutation(s): 0 
Gene Names: TMC1CIB2KIP2
UniProt & NIH Common Fund Data Resources
Find proteins for O75838 (Homo sapiens)
Explore O75838 
Go to UniProtKB:  O75838
PHAROS:  O75838
GTEx:  ENSG00000136425 
Find proteins for Q8TDI8 (Homo sapiens)
Explore Q8TDI8 
Go to UniProtKB:  Q8TDI8
PHAROS:  Q8TDI8
GTEx:  ENSG00000165091 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsO75838Q8TDI8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free:  0.242 (Depositor), 0.245 (DCC) 
  • R-Value Work:  0.201 (Depositor), 0.206 (DCC) 
  • R-Value Observed: 0.203 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 32.065α = 90
b = 121.849β = 91.74
c = 62.208γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
HKL-3000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-15
    Type: Initial release
  • Version 1.1: 2025-03-12
    Changes: Database references