8XK6

S2A5 Fab bound to SFTSV glycoprotein Gn


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

A broadly protective antibody targeting the glycoprotein Gn inhibits severe fever with thrombocytopenia syndrome virus infection.

Ren, X.Sun, J.Kuang, W.Yu, F.Wang, B.Wang, Y.Deng, W.Yang, S.Hu, Y.Deng, Z.Ning, Y.Zhao, H.

(2024) Nat Commun 


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelopment polyprotein357Severe fever with thrombocytopenia syndrome virusMutation(s): 0 
UniProt
Find proteins for R4V2Q5 (Dabie bandavirus)
Explore R4V2Q5 
Go to UniProtKB:  R4V2Q5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupR4V2Q5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
mAb S2A5 Fab heavy chainB [auth H]251Mus musculusMutation(s): 0 
Gene Names: Fab heavy chain
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Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
mAb S2A5 Fab light chainC [auth L]237Mus musculusMutation(s): 0 
Gene Names: Fab light chain
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.232 
  • Space Group: P 63 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 158.02α = 90
b = 158.02β = 90
c = 190.45γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2024-07-10 
  • Deposition Author(s): Deng, Z.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-10
    Type: Initial release