8XFU | pdb_00008xfu

DUF3055 from Staphylococcus aureus adopts unique strategy for structural distinctiveness

• PDB DOI: https://doi.org/10.2210/pdb8XFU/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Staphylococcus aureus subsp. aureus Mu50
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-12-14 Released: 2024-10-30 
• Deposition Author(s): Kim, H.J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.61 Å
• R-Value Free: 
  0.262 (Depositor), 0.263 (DCC) 
• R-Value Work: 
  0.213 (Depositor), 0.236 (DCC) 
• R-Value Observed: 
  0.215 (Depositor) 

Starting Model: experimental

Literature

DUF3055 from Staphylococcus aureus adopts unique strategy for structural distinctiveness.

Kim, H.J., Kim, H.S.

(2024) Appl Biol Chem 67

• DOI: https://doi.org/10.1186/s13765-024-00913-7

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 6-mer - A6 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 61.81 kDa 
• Atom Count: 4,249 
• Modeled Residue Count: 523 
• Deposited Residue Count: 534 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytosolic protein	A, B, C, D, E, F	89	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 0  Gene Names: SAV0927
UniProt
Find proteins for A0A0H3JQV2 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3JQV2  Go to UniProtKB:  A0A0H3JQV2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.61 Å
• R-Value Free:  0.262 (Depositor), 0.263 (DCC) 
• R-Value Work:  0.213 (Depositor), 0.236 (DCC) 
• R-Value Observed: 0.215 (Depositor) 

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.658	α = 90
b = 105.658	β = 90
c = 451.97	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-10-30 
Deposition Author(s): Kim, H.J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-10-30
  Type: Initial release