8X8U | pdb_00008x8u

Crystal structure of F.occidentalis GABARAP

• PDB DOI: https://doi.org/10.2210/pdb8X8U/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Frankliniella occidentalis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-11-28 Released: 2024-12-04 
• Deposition Author(s): Zhang, S.Q., Luo, X., Wu, Z.L., Zhao, K.H., Li, X.Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.206 (Depositor), 0.206 (DCC) 
• R-Value Work: 
  0.171 (Depositor), 0.172 (DCC) 
• R-Value Observed: 
  0.174 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of F.occidentalis GABARAP

Zhang, S.Q., Luo, X., Wu, Z.L., Zhao, K.H., Li, X.Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: homology

Macromolecule Content 

• Total Structure Weight: 14.02 kDa 
• Atom Count: 1,079 
• Modeled Residue Count: 118 
• Deposited Residue Count: 118 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-aminobutyric acid receptor-associated protein	A	118	Frankliniella occidentalis	Mutation(s): 0  Gene Names: LOC113211372
UniProt
Find proteins for A0A6J1T1Q2 (Frankliniella occidentalis) Explore A0A6J1T1Q2  Go to UniProtKB:  A0A6J1T1Q2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.206 (Depositor), 0.206 (DCC) 
• R-Value Work:  0.171 (Depositor), 0.172 (DCC) 
• R-Value Observed: 0.174 (Depositor) 

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.901	α = 90
b = 53.901	β = 90
c = 55.665	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-12-04 
Deposition Author(s): Zhang, S.Q., Luo, X., Wu, Z.L., Zhao, K.H., Li, X.Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32172461

Revision History  

• Version 1.0: 2024-12-04
  Type: Initial release