8WXS | pdb_00008wxs

Crystal structure of the LOTUS domain of Drosophila Tejas

PDB DOI: https://doi.org/10.2210/pdb8WXS/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Drosophila melanogaster
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2023-10-30 Released: 2024-11-06
Deposition Author(s): Huang, Y., Zhang, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.223 (Depositor), 0.223 (DCC)
R-Value Work:
0.186 (Depositor), 0.186 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8WXS

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of the LOTUS domain of Drosophila Tejas

Huang, Y., Zhang, Y.

To be published.

Macromolecule Content

Total Structure Weight: 17.1 kDa
Atom Count: 1,318
Modeled Residue Count: 151
Deposited Residue Count: 160
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FI02030p	A, B	80	Drosophila melanogaster	Mutation(s): 2 Gene Names: tej
UniProt
Find proteins for A1Z9P1 (Drosophila melanogaster) Explore A1Z9P1 Go to UniProtKB: A1Z9P1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A1Z9P1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.223 (Depositor), 0.223 (DCC)
R-Value Work: 0.186 (Depositor), 0.186 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.645	α = 90
b = 36.645	β = 90
c = 235.485	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-11-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32171186
National Natural Science Foundation of China (NSFC)	China	31870741

Revision History (Full details and data files)

Version 1.0: 2024-11-06
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.