8WQQ | pdb_00008wqq

Proteomics study reveals that ASFV g5Rp protein interacts with eukaryotic translation initiation factor 5A and may regulate host translation

• PDB DOI: https://doi.org/10.2210/pdb8WQQ/pdb

• Classification: VIRAL PROTEIN
• Organism(s): ASFV-like virus WU
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-10-12 Released: 2024-10-16 
• Deposition Author(s): Liang, R.Y., Xu, C.M., Zhao, X.M.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.287 (Depositor), 0.287 (DCC) 
• R-Value Work: 
  0.237 (Depositor), 0.237 (DCC) 
• R-Value Observed: 
  0.241 (Depositor) 

Starting Model: experimental

Literature

Proteomics study reveals that ASFV g5Rp protein interacts with eukaryotic translation initiation factor 5A and may regulate host translation.

Liang, R.Y., Xu, C.M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 58.2 kDa 
• Atom Count: 4,283 
• Modeled Residue Count: 486 
• Deposited Residue Count: 486 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
mRNA-decapping protein g5R	A, B	243	ASFV-like virus WU	Mutation(s): 0  Gene Names: Ba71V-102 EC: 3.6.1.52 (UniProt), 3.1.3 (UniProt)
UniProt
Find proteins for P32092 (African swine fever virus (strain Badajoz 1971 Vero-adapted)) Explore P32092  Go to UniProtKB:  P32092

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.287 (Depositor), 0.287 (DCC) 
• R-Value Work:  0.237 (Depositor), 0.237 (DCC) 
• R-Value Observed: 0.241 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.199	α = 90
b = 77.296	β = 90
c = 96.779	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-10-16 
Deposition Author(s): Liang, R.Y., Xu, C.M., Zhao, X.M.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32302912

Revision History  

• Version 1.0: 2024-10-16
  Type: Initial release