8WOJ | pdb_00008woj

Structure of RxLR121 effector from phytophthora capsici

• PDB DOI: https://doi.org/10.2210/pdb8WOJ/pdb

• Classification: IMMUNOSUPPRESSANT
• Organism(s): Phytophthora capsici LT1534
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-10-07 Released: 2023-12-06 
• Deposition Author(s): Yang, C.C., Zhang, X.G.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.77 Å
• R-Value Free: 
  0.236 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.200 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.204 (Depositor) 

Literature

Structure of RxLR121 effector from phytophthora capsici

Yang, C.C., Zhang, X.G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 18.82 kDa 
• Atom Count: 1,449 
• Modeled Residue Count: 151 
• Deposited Residue Count: 152 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RxLR121 effector	A, B	76	Phytophthora capsici LT1534	Mutation(s): 0
UniProt
Find proteins for A0AAJ6N6K8 (Phytophthora capsici LT1534) Explore A0AAJ6N6K8  Go to UniProtKB:  A0AAJ6N6K8

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.77 Å
• R-Value Free:  0.236 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.200 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.204 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.383	α = 90
b = 34.448	β = 89.96
c = 50.388	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SOLVE	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-12-06 
Deposition Author(s): Yang, C.C., Zhang, X.G.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	CARS-25-03B

Revision History  

• Version 1.0: 2023-12-06
  Type: Initial release
  
• Version 1.1: 2024-11-20
  Changes: Structure summary