8WN8

CryoEM structure of ZIKV rsNS1

PDB DOI: https://doi.org/10.2210/pdb8WN8/pdb
EM Map EMD-37663: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Zika virus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-10-05 Released: 2024-05-08
Deposition Author(s): Chew, B.L.A., Luo, D.
Funding Organization(s): Ministry of Education (MoE, Singapore)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis of Zika virus NS1 multimerization and human antibody recognition

Chew, B.L.A., Ngoh, A.Q., Phoo, W.W., Weng, M.J.G., Sheng, H.J., Chan, K.W.K., Tan, E.Y.J., Gelbart, T., Xu, C., Tan, G.S., Vasudevan, S.G., Luo, D.

(2024) Npj Viruses 2: 14

DOI: https://doi.org/10.1038/s44298-024-00024-6

Macromolecule Content

Total Structure Weight: 165.45 kDa
Atom Count: 11,296
Modelled Residue Count: 1,408
Deposited Residue Count: 1,444
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-structural protein 1	A [auth B], B [auth C], C [auth D], D [auth E]	361	Zika virus	Mutation(s): 0
UniProt
Find proteins for Q32ZE1 (Zika virus) Explore Q32ZE1 Go to UniProtKB: Q32ZE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q32ZE1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG (Subject of Investigation/LOI) Query on NAG Download Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain F [auth C] MOL2 format, chain E [auth B] MOL2 format, chain F [auth C]	E [auth B], F [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain E [auth B] Focus chain F [auth C] Interactions & Density Focus chain E [auth B] Focus chain F [auth C]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21rc1_5015

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-08

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Education (MoE, Singapore)	Singapore	T2EP30220-0020

Revision History (Full details and data files)

Version 1.0: 2024-05-08
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.