8WKA | pdb_00008wka

Aldo-keto reductase KmAKR - T23V/Y28A/K29H/T63M/Q213A/Y296W/W297H

PDB DOI: https://doi.org/10.2210/pdb8WKA/pdb

Classification: OXIDOREDUCTASE
Organism(s): Kluyveromyces marxianus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-09-27 Released: 2024-10-02
Deposition Author(s): Xu, S.Y., Zhou, L., Xu, Y., Wang, Y.J., Zheng, Y.G.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free:
0.237 (Depositor), 0.242 (DCC)
R-Value Work:
0.196 (Depositor), 0.203 (DCC)
R-Value Observed:
0.198 (Depositor)

Starting Model: in silico
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This is version 1.0 of the entry. See complete history.

Literature

Aldo-keto reductase KmAKR - T23V/Y28A/K29H/T63M/Q213A/Y296W/W297H from Kluyveromyces marxianus

Xu, S.Y., Zhou, L., Xu, Y., Wang, Y.J., Zheng, Y.G.

To be published.

Macromolecule Content

Total Structure Weight: 141.17 kDa
Atom Count: 10,303
Modeled Residue Count: 1,221
Deposited Residue Count: 1,240
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NADPH-dependent alpha-keto amide reductase	A, B, C, D	310	Kluyveromyces marxianus	Mutation(s): 7 Gene Names: KLMA_60481
UniProt
Find proteins for W0TDP7 (Kluyveromyces marxianus (strain DMKU3-1042 / BCC 29191 / NBRC 104275)) Explore W0TDP7 Go to UniProtKB: W0TDP7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	W0TDP7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.237 (Depositor), 0.242 (DCC)
R-Value Work: 0.196 (Depositor), 0.203 (DCC)
R-Value Observed: 0.198 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.666	α = 90
b = 115.182	β = 101.46
c = 83.461	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
DIALS	data reduction
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-10-02

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	22178318

Revision History (Full details and data files)

Version 1.0: 2024-10-02
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.