Download MendeleyStructural and bioinformatics analysis of single-domain substrate-binding protein from Rhodothermus marinus.
Nam, K.H.(2024) Biochem Biophys Rep 37: 101611-101611
- PubMed: 38269326
- DOI: https://doi.org/10.1016/j.bbrep.2023.101611
- Primary Citation of Related Structures:
8WGK, 8WGL - PubMed Abstract:
Substrate-binding proteins (SBPs) are key elements in determining the substrate specificity and high affinity of the ATP-binding cassette uptake system. A typical SBP has two domains that recognize substrates and are responsible for the specific substrate delivery. Conversely, in GenBank, genes for SBPs constituting a single domain SBP are often found in vicinity of a methyl-accepting chemotaxis protein gene. However, the molecular function and mechanism of single domain SBPs are not fully elucidated. To understand their molecular functions, we performed a crystallographic study of single domain SBP from Rhodothermus marinus (RmSBP). RmSBP crystals were soaked in solution containing NaBr or HgCl 2 and their structures determined at 1.75 and 2.3 Å resolution, respectively. RmSBP soaked in NaBr exhibited disorder of the α2-helix, β5-to β6-strand loop, and C-terminus region, showing the structural dynamic region of RmSBP. RmSBP soaked in HgCl 2 showed that Hg 2+ bound to Cys145 located between the α5-and α6-helices. The structural properties of RmSBP were compared with those of single domain SBP homologs. These results will contribute to continued identification of the molecular function and mechanism of single domain SBPs.
Organizational Affiliation:
College of General Education, Kookmin University, Seoul, 20707, Republic of Korea.
