8WDA | pdb_00008wda

Classification: MEMBRANE PROTEIN
Organism(s): Mycobacterium tuberculosis H37Rv, Mycolicibacterium smegmatis MC2 155
Expression System: Mycolicibacterium smegmatis MC2 155
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2023-09-14 Released: 2024-09-18
Deposition Author(s): Hu, T., Zhang, B., Rao, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Hu, T., Zhang, B., Rao, Z.

To be published.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable periplasmic dipeptide-binding lipoprotein DppA	A	517	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: dppA, Rv3666c
UniProt
Find proteins for I6X811 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore I6X811 Go to UniProtKB: I6X811
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	I6X811
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable dipeptide-transport integral membrane protein ABC transporter DppB	B	308	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: dppB, Rv3665c Membrane Entity: Yes
UniProt
Find proteins for I6YGV9 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore I6YGV9 Go to UniProtKB: I6YGV9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	I6YGV9
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable dipeptide-transport integral membrane protein ABC transporter DppC	C	287	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: dppC, Rv3664c Membrane Entity: Yes
UniProt
Find proteins for L0TEV4 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore L0TEV4 Go to UniProtKB: L0TEV4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	L0TEV4
Sequence Annotations Expand
Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
tetrapeptide	D [auth E]	4	Mycolicibacterium smegmatis MC2 155	Mutation(s): 0

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable dipeptide-transport ATP-binding protein ABC transporter DppD	E [auth D]	548	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: dppD, Rv3663c Membrane Entity: Yes
UniProt
Find proteins for I6Y482 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore I6Y482 Go to UniProtKB: I6Y482
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	I6Y482
Sequence Annotations Expand
Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
9XX (Subject of Investigation/LOI) Query on 9XX Download:Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A] mmCIF format, chain G [auth A]	G [auth A]	(2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate C₃₈ H₇₄ O₄ LWLNRPPCJIGPLI-ZPGRZCPFSA-N		Interactions Focus chain G [auth A] Interactions & Density Focus chain G [auth A]
PLM (Subject of Investigation/LOI) Query on PLM Download:Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A] mmCIF format, chain F [auth A]	F [auth A]	PALMITIC ACID C₁₆ H₃₂ O₂ IPCSVZSSVZVIGE-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Interactions & Density Focus chain F [auth A]