8W8Z | pdb_00008w8z

Escherichia coli ferritin mutant-M52H

PDB DOI: https://doi.org/10.2210/pdb8W8Z/pdb

Classification: LYASE
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-09-04 Released: 2024-09-04
Deposition Author(s): Zhao, G., Zeng, R.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.252 (Depositor), 0.251 (DCC)
R-Value Work:
0.219 (Depositor), 0.219 (DCC)
R-Value Observed:
0.219 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of Escherichia coli ferritin mutant M52H at 2.05 Angstroms resolution

Zhao, G., Zeng, R.

To be published.

Macromolecule Content

Total Structure Weight: 146.25 kDa
Atom Count: 10,321
Modeled Residue Count: 1,264
Deposited Residue Count: 1,264
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacterioferritin	A, B, C, D, E A, B, C, D, E, F, G, H	158	Escherichia coli	Mutation(s): 1 Gene Names: bfr EC: 1.16.3.1
UniProt
Find proteins for A0A023L7J3 (Escherichia coli) Explore A0A023L7J3 Go to UniProtKB: A0A023L7J3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A023L7J3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.252 (Depositor), 0.251 (DCC)
R-Value Work: 0.219 (Depositor), 0.219 (DCC)
R-Value Observed: 0.219 (Depositor)

Space Group: I 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 224.99	α = 90
b = 224.99	β = 90
c = 224.99	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-09-04

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31972018

Revision History (Full details and data files)

Version 1.0: 2024-09-04
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.