8W5K

Cryo-EM structure of the yeast TOM core complex crosslinked by BS3 (from TOM-TIM23 complex)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The architecture of substrate-engaged TOM-TIM23 supercomplex reveals preprotein proximity sites for mitochondrial protein translocation.

Wang, Q.Zhuang, J.Huang, R.Guan, Z.Yan, L.Hong, S.Zhang, L.Huang, C.Liu, Z.Yin, P.

(2024) Cell Discov 10: 19-19


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import receptor subunit TOM22A [auth B],
E [auth J]
152Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TOM22MAS17MAS22MOM22YNL131WN1217N1862
Membrane Entity: Yes 
UniProt
Find proteins for P49334 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP49334
Sequence Annotations
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import receptor subunit TOM5B [auth C],
F [auth K]
50Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TOM5MOM8AYPR133W-A
Membrane Entity: Yes 
UniProt
Find proteins for P80967 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP80967
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import receptor subunit TOM6C [auth D],
G [auth L]
61Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TOM6ISP6YOR045W
Membrane Entity: Yes 
UniProt
Find proteins for P33448 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP33448
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import receptor subunit TOM7D [auth E],
H [auth M]
60Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TOM7MOM7YNL070WN2378
Membrane Entity: Yes 
UniProt
Find proteins for P53507 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import receptor subunit TOM40I [auth F],
J [auth I]
387Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TOM40ISP42MOM38YMR203WYM8325.04
Membrane Entity: Yes 
UniProt
Find proteins for P23644 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
46E (Subject of Investigation/LOI)
Query on 46E

Download Ideal Coordinates CCD File 
K [auth I](2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate
C33 H66 N O8 P
NEZDNQCXEZDCBI-WJOKGBTCSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-13
    Type: Initial release