8W52 | pdb_00008w52

p17 protein structure of HIV2 when OLA1 existing

PDB DOI: https://doi.org/10.2210/pdb8W52/pdb

Classification: VIRAL PROTEIN
Organism(s): Human immunodeficiency virus type 2 (ISOLATE BEN)
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-08-25 Released: 2023-09-13
Deposition Author(s): Dang, L.L.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.38 Å
R-Value Free:
0.248 (Depositor), 0.241 (DCC)
R-Value Work:
0.210 (Depositor), 0.209 (DCC)
R-Value Observed:
0.225 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

p17 protein structure of HIV2 when OLA1 existing

Dang, L.L.

To be published.

Macromolecule Content

Total Structure Weight: 243.19 kDa
Atom Count: 14,103
Modeled Residue Count: 1,717
Deposited Residue Count: 2,160
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gag polyprotein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	135	Human immunodeficiency virus type 2 (ISOLATE BEN)	Mutation(s): 0 Gene Names: gag
UniProt
Find proteins for P18095 (Human immunodeficiency virus type 2 subtype A (isolate BEN)) Explore P18095 Go to UniProtKB: P18095
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P18095
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain AA [auth I] SDF format, chain BA [auth J] SDF format, chain CA [auth J] SDF format, chain DA [auth K] SDF format, chain EA [auth K] SDF format, chain FA [auth L] SDF format, chain GA [auth L] SDF format, chain HA [auth L] SDF format, chain IA [auth N] SDF format, chain JA [auth P] SDF format, chain Q [auth A] SDF format, chain R [auth A] SDF format, chain S [auth B] SDF format, chain T [auth B] SDF format, chain U [auth C] SDF format, chain V [auth E] SDF format, chain W [auth E] SDF format, chain X [auth G] SDF format, chain Y [auth H] SDF format, chain Z [auth I] MOL2 format, chain AA [auth I] MOL2 format, chain BA [auth J] MOL2 format, chain CA [auth J] MOL2 format, chain DA [auth K] MOL2 format, chain EA [auth K] MOL2 format, chain FA [auth L] MOL2 format, chain GA [auth L] MOL2 format, chain HA [auth L] MOL2 format, chain IA [auth N] MOL2 format, chain JA [auth P] MOL2 format, chain Q [auth A] MOL2 format, chain R [auth A] MOL2 format, chain S [auth B] MOL2 format, chain T [auth B] MOL2 format, chain U [auth C] MOL2 format, chain V [auth E] MOL2 format, chain W [auth E] MOL2 format, chain X [auth G] MOL2 format, chain Y [auth H] MOL2 format, chain Z [auth I] mmCIF format, chain AA [auth I] mmCIF format, chain BA [auth J] mmCIF format, chain CA [auth J] mmCIF format, chain DA [auth K] mmCIF format, chain EA [auth K] mmCIF format, chain FA [auth L] mmCIF format, chain GA [auth L] mmCIF format, chain HA [auth L] mmCIF format, chain IA [auth N] mmCIF format, chain JA [auth P] mmCIF format, chain Q [auth A] mmCIF format, chain R [auth A] mmCIF format, chain S [auth B] mmCIF format, chain T [auth B] mmCIF format, chain U [auth C] mmCIF format, chain V [auth E] mmCIF format, chain W [auth E] mmCIF format, chain X [auth G] mmCIF format, chain Y [auth H] mmCIF format, chain Z [auth I]	AA [auth I] BA [auth J] CA [auth J] DA [auth K] EA [auth K] AA [auth I], BA [auth J], CA [auth J], DA [auth K], EA [auth K], FA [auth L], GA [auth L], HA [auth L], IA [auth N], JA [auth P], Q [auth A], R [auth A], S [auth B], T [auth B], U [auth C], V [auth E], W [auth E], X [auth G], Y [auth H], Z [auth I]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain AA [auth I] Focus chain BA [auth J] Focus chain CA [auth J] Focus chain DA [auth K] Focus chain EA [auth K] Focus chain FA [auth L] Focus chain GA [auth L] Focus chain HA [auth L] Focus chain IA [auth N] Focus chain JA [auth P] Focus chain Q [auth A] Focus chain R [auth A] Focus chain S [auth B] Focus chain T [auth B] Focus chain U [auth C] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth G] Focus chain Y [auth H] Focus chain Z [auth I] Interactions & Density Focus chain AA [auth I] Focus chain BA [auth J] Focus chain CA [auth J] Focus chain DA [auth K] Focus chain EA [auth K] Focus chain FA [auth L] Focus chain GA [auth L] Focus chain HA [auth L] Focus chain IA [auth N] Focus chain JA [auth P] Focus chain Q [auth A] Focus chain R [auth A] Focus chain S [auth B] Focus chain T [auth B] Focus chain U [auth C] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth G] Focus chain Y [auth H] Focus chain Z [auth I]