Structural and biochemical analysis of subunit assembly, DNA recognition and cleavage by a Type IIB restriction-modification enzyme: BsaXI
Shen, B.W., Heiter, D., Xu, S., Stoddard, B.L.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RM.BsaXI | 916 | Geobacillus stearothermophilus | Mutation(s): 0  Gene Names: E5Z46_18465 EC: 2.1.1.72 | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
S.BsaXI | 476 | Geobacillus stearothermophilus | Mutation(s): 0  Gene Names: GT3921_04730 | ||
UniProt | |||||
Find proteins for A0A226QBA7 (Geobacillus thermocatenulatus) Explore A0A226QBA7  Go to UniProtKB:  A0A226QBA7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A226QBA7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (41-MER) | 52 | Geobacillus stearothermophilus | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (41-MER) | 52 | Geobacillus stearothermophilus | |||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SAM Query on SAM | G [auth B] | S-ADENOSYLMETHIONINE C15 H22 N6 O5 S MEFKEPWMEQBLKI-FCKMPRQPSA-N | |||
SAH Query on SAH | F [auth A] | S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N |
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | cryoSPARC | 3.3 |
MODEL REFINEMENT | PHENIX | 1.19.2 |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | Ro1-GM105691 |