8W15 | pdb_00008w15

HTT in complex with HAP40 in the apo state.

PDB DOI: https://doi.org/10.2210/pdb8W15/pdb
EM Map EMD-43715: EMDB EMDataResource

Classification: UNKNOWN FUNCTION
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-02-15 Released: 2024-03-13
Deposition Author(s): Poweleit, N., Boudet, J., Doherty, E.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Discovery of a Small Molecule Ligand to the Huntingtin/HAP40 complex

Poweleit, N., Boudet, J., Doherty, E.

To be published.

Macromolecule Content

Total Structure Weight: 394.84 kDa
Atom Count: 21,207
Modeled Residue Count: 2,710
Deposited Residue Count: 3,576
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Huntingtin	A	3,187	Homo sapiens	Mutation(s): 0 Gene Names: HTT, HD, IT15
UniProt & NIH Common Fund Data Resources
Find proteins for P42858 (Homo sapiens) Explore P42858 Go to UniProtKB: P42858
PHAROS: P42858 GTEx: ENSG00000197386
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P42858
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
40-kDa huntingtin-associated protein	B	389	Homo sapiens	Mutation(s): 0 Gene Names: F8A1, F8A2, F8A3
UniProt & NIH Common Fund Data Resources
Find proteins for P23610 (Homo sapiens) Explore P23610 Go to UniProtKB: P23610
GTEx: ENSG00000277150
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P23610
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	Coot
MODEL REFINEMENT	PHENIX
RECONSTRUCTION	cryoSPARC	3.3

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-03-13

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private	United States	--

Revision History (Full details and data files)

Version 1.0: 2024-03-13
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.