OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (composite map)
Weaver, T.M., Ling, J.A., Freudenthal, B.D.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H3.2 | A [auth E], E [auth A] | 135 | Homo sapiens | Mutation(s): 1  Gene Names: H3C15, HIST2H3A, H3C14, H3F2, H3FM, HIST2H3C, H3C13, HIST2H3D | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q71DI3 (Homo sapiens) Explore Q71DI3  Go to UniProtKB:  Q71DI3 | |||||
PHAROS:  Q71DI3 GTEx:  ENSG00000183598  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q71DI3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H4 | B [auth F], F [auth B] | 102 | Homo sapiens | Mutation(s): 0  Gene Names:  H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, H4/G... | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62805 (Homo sapiens) Explore P62805  Go to UniProtKB:  P62805 | |||||
PHAROS:  P62805 GTEx:  ENSG00000274618  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62805 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2A type 1 | C [auth G], G [auth C] | 129 | Homo sapiens | Mutation(s): 0  Gene Names:  H2AC11, H2AFP, HIST1H2AG, H2AC13, H2AFC, HIST1H2AI, H2AC15, H2AFD, HIST1H2AK, H2AC16... | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0C0S8 (Homo sapiens) Explore P0C0S8  Go to UniProtKB:  P0C0S8 | |||||
PHAROS:  P0C0S8 GTEx:  ENSG00000196747  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0C0S8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2B type 1-C/E/F/G/I | D [auth H], H [auth D] | 125 | Homo sapiens | Mutation(s): 0  Gene Names:  H2BC4, H2BFL, HIST1H2BC, H2BC6, H2BFH, HIST1H2BE, H2BC7, H2BFG, HIST1H2BF, H2BC8... | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62807 (Homo sapiens) Explore P62807  Go to UniProtKB:  P62807 | |||||
PHAROS:  P62807 GTEx:  ENSG00000180596  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62807 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
N-glycosylase/DNA lyase | 345 | Homo sapiens | Mutation(s): 1  Gene Names: OGG1, MMH, MUTM, OGH1 EC: 3.2.2 (PDB Primary Data), 4.2.99.18 (PDB Primary Data) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15527 (Homo sapiens) Explore O15527  Go to UniProtKB:  O15527 | |||||
PHAROS:  O15527 GTEx:  ENSG00000114026  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O15527 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Length | Organism | Image | |
601 I strand (non-damaged strand) | 147 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Length | Organism | Image | |
601 J strand (damaged strand) | 147 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35GM128562 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | F32GM140718 |