8VWT

OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (composite map)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (composite map)

Weaver, T.M.Ling, J.A.Freudenthal, B.D.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H3.2A [auth E],
E [auth A]
135Homo sapiensMutation(s): 1 
Gene Names: H3C15HIST2H3AH3C14H3F2H3FMHIST2H3CH3C13HIST2H3D
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PHAROS:  Q71DI3
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UniProt GroupQ71DI3
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H4B [auth F],
F [auth B]
102Homo sapiensMutation(s): 0 
Gene Names: 
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Find proteins for P62805 (Homo sapiens)
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PHAROS:  P62805
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UniProt GroupP62805
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2A type 1C [auth G],
G [auth C]
129Homo sapiensMutation(s): 0 
Gene Names: 
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Find proteins for P0C0S8 (Homo sapiens)
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PHAROS:  P0C0S8
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UniProt GroupP0C0S8
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2B type 1-C/E/F/G/ID [auth H],
H [auth D]
125Homo sapiensMutation(s): 0 
Gene Names: 
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Find proteins for P62807 (Homo sapiens)
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UniProt GroupP62807
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
N-glycosylase/DNA lyase345Homo sapiensMutation(s): 1 
Gene Names: OGG1MMHMUTMOGH1
EC: 3.2.2 (PDB Primary Data), 4.2.99.18 (PDB Primary Data)
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Find proteins for O15527 (Homo sapiens)
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PHAROS:  O15527
GTEx:  ENSG00000114026 
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Entity ID: 5
MoleculeChains LengthOrganismImage
601 I strand (non-damaged strand)147synthetic construct
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Entity ID: 6
MoleculeChains LengthOrganismImage
601 J strand (damaged strand)147synthetic construct
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM128562
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesF32GM140718

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-30
    Type: Initial release