Skip to main content

 8VT4 | pdb_00008vt4

Cryo-EM structure of human ABC transporter ABCC1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.79 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8VT4

This is version 1.2 of the entry. See complete history. 

Literature

Structures of ATP-binding cassette transporter ABCC1 reveal the molecular basis of cyclic dinucleotide cGAMP export.

Shinde, O., Boyer, J.A., Cambier, S., VanPortfliet, J.J., Sui, X., Yadav, G.P., Viverette, E.G., Borgnia, M.J., West, A.P., Zhang, Q., Stetson, D.B., Li, P.

(2025) Immunity 58: 59

  • DOI: https://doi.org/10.1016/j.immuni.2024.12.002
  • Primary Citation Related Structures: 
    8VT4, 8VUX, 8VVC

  • PubMed Abstract: 

    Cyclic nucleotide GMP-AMP (cGAMP) plays a critical role in mediating the innate immune response through the cyclic GMP-AMP synthase (cGAS)-stimulator of interferon genes (STING) pathway. Recent studies showed that ATP-binding cassette subfamily C member 1 (ABCC1) is a cGAMP exporter. The exported cGAMP can be imported into uninfected cells to stimulate a STING-mediated innate immune response. However, the molecular basis of cGAMP export mediated by ABCC1 remains unclear. Here, we report the cryoelectron microscopy (cryo-EM) structures of human ABCC1 in a ligand-free state and a cGAMP-bound state. These structures reveal that ABCC1 forms a homodimer via its N-terminal transmembrane domain. The ligand-bound structure shows that cGAMP is recognized by a positively charged pocket. Mutagenesis and functional studies confirmed the roles of the ligand-binding pocket in cGAMP recognition and export. This study provides insights into the structure and function of ABCC1 as a cGAMP exporter and lays a foundation for future research targeting ABCC1 in infection and anti-cancer immunity.


  • Organizational Affiliation: 
    • Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.

Macromolecule Content 

  • Total Structure Weight: 344.5 kDa 
  • Atom Count: 16,050 
  • Modeled Residue Count: 2,026 
  • Deposited Residue Count: 3,062 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Multidrug resistance-associated protein 1
A, B
1,531Homo sapiensMutation(s): 0 
Gene Names: ABCC1, MRP, MRP1
EC: 7.6.2.2 (PDB Primary Data), 7.6.2.3 (PDB Primary Data), 7.6.2 (UniProt)
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P33527 (Homo sapiens)
Explore P33527 
Go to UniProtKB:  P33527
PHAROS:  P33527
GTEx:  ENSG00000103222 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP33527
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.79 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Welch FoundationUnited StatesA-2107
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI145287

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-25
    Type: Initial release
  • Version 1.1: 2025-01-22
    Changes: Data collection, Database references
  • Version 1.2: 2025-01-29
    Changes: Data collection, Database references