8VR7 | pdb_00008vr7

crystal structure of the Pcryo_0619 N-acetyltransferase from Psychrobacter cryohalolentis K5 int he presence of acetyl coenzyme A

PDB DOI: https://doi.org/10.2210/pdb8VR7/pdb

Classification: TRANSFERASE
Organism(s): Psychrobacter cryohalolentis K5
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-01-20 Released: 2024-01-31
Deposition Author(s): Dunsirn, M.M., Bockhaus, N.J., Thoden, J.B., Holden, H.M.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.240 (Depositor), 0.244 (DCC)
R-Value Work:
0.197 (Depositor), 0.203 (DCC)
R-Value Observed:
0.199 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Biochemical Investigation of the Enzymes Required for the Production of 2,3,4-triacetoamido-2,3,4-trideoxy-l-arabinose in Psychrobacter cryohalolentis K5

Bockhaus, N.J., Dunsirn, M.M., Thoden, J.B., Holden, H.M.

To be published.

Macromolecule Content

Total Structure Weight: 123.25 kDa
Atom Count: 9,179
Modeled Residue Count: 1,065
Deposited Residue Count: 1,092
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyltransferase, putative	A, B, C, D, E A, B, C, D, E, F	182	Psychrobacter cryohalolentis K5	Mutation(s): 0 Gene Names: Pcryo_0619
UniProt
Find proteins for Q1QD51 (Psychrobacter cryohalolentis (strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 / K5)) Explore Q1QD51 Go to UniProtKB: Q1QD51
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1QD51
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO (Subject of Investigation/LOI) Query on ACO Download:Ideal Coordinates CCD File SDF format, chain K [auth C] SDF format, chain L [auth D] SDF format, chain M [auth E] SDF format, chain G [auth A] MOL2 format, chain K [auth C] MOL2 format, chain L [auth D] MOL2 format, chain M [auth E] MOL2 format, chain G [auth A] mmCIF format, chain K [auth C] mmCIF format, chain L [auth D] mmCIF format, chain M [auth E] mmCIF format, chain G [auth A]	G [auth A], K [auth C], L [auth D], M [auth E]	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Interactions Focus chain G [auth A] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth E] Interactions & Density Focus chain G [auth A] Focus chain K [auth C] Focus chain L [auth D] Focus chain M [auth E]
COA Query on COA Download:Ideal Coordinates CCD File SDF format, chain H [auth B] SDF format, chain O [auth F] MOL2 format, chain H [auth B] MOL2 format, chain O [auth F] mmCIF format, chain H [auth B] mmCIF format, chain O [auth F]	H [auth B], O [auth F]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain H [auth B] Focus chain O [auth F] Interactions & Density Focus chain H [auth B] Focus chain O [auth F]
PAP Query on PAP Download:Ideal Coordinates CCD File SDF format, chain N [auth E] MOL2 format, chain N [auth E] mmCIF format, chain N [auth E]	N [auth E]	3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ GBBWIZKLHXYJOA-KQYNXXCUSA-N		Interactions Focus chain N [auth E] Interactions & Density Focus chain N [auth E]
EP1 Query on EP1 Download:Ideal Coordinates CCD File SDF format, chain J [auth B] MOL2 format, chain J [auth B] mmCIF format, chain J [auth B]	J [auth B]	3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID C₉ H₂₀ N₂ O₄ S OWXMKDGYPWMGEB-UHFFFAOYSA-N		Interactions Focus chain J [auth B] Interactions & Density Focus chain J [auth B]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain I [auth B] SDF format, chain P [auth F] MOL2 format, chain I [auth B] MOL2 format, chain P [auth F] mmCIF format, chain I [auth B] mmCIF format, chain P [auth F]	I [auth B], P [auth F]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain I [auth B] Focus chain P [auth F] Interactions & Density Focus chain I [auth B] Focus chain P [auth F]