8V4W | pdb_00008v4w

Crystal structure of Campylobacter concisus Csep1

PDB DOI: https://doi.org/10.2210/pdb8V4W/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Campylobacter concisus
Expression System: Campylobacter concisus
Mutation(s): No

Deposited: 2023-11-29 Released: 2025-01-08
Deposition Author(s): Anna, R., Xiaotian, Z.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free:
0.167 (Depositor), 0.167 (DCC)
R-Value Work:
0.126 (Depositor), 0.126 (DCC)
R-Value Observed:
0.129 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Campylobacter concisus Csep1

Anna, R., Xiaotian, Z.

To be published.

Macromolecule Content

Total Structure Weight: 24.45 kDa
Atom Count: 1,943
Modeled Residue Count: 207
Deposited Residue Count: 207
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Secreted protein 1	A	207	Campylobacter concisus	Mutation(s): 0 Gene Names: CCS77_2074
UniProt
Find proteins for A0A2R4P333 (Campylobacter concisus) Explore A0A2R4P333 Go to UniProtKB: A0A2R4P333
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2R4P333
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACY Query on ACY Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ACETIC ACID C₂ H₄ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.167 (Depositor), 0.167 (DCC)
R-Value Work: 0.126 (Depositor), 0.126 (DCC)
R-Value Observed: 0.129 (Depositor)

Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.792	α = 90
b = 85.792	β = 90
c = 55.194	γ = 120

Software Package:

Software Name	Purpose
XDS	data scaling
Aimless	data scaling
pointless	data scaling
REFMAC	refinement

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-01-08

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	Australia	PS46772

Revision History (Full details and data files)

Version 1.0: 2025-01-08
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.