8UW4

Crystal structure of hydroxyisourate hydrolase from Herbaspirillum seropedicae

• PDB DOI: https://doi.org/10.2210/pdb8UW4/pdb

• Classification: HYDROLASE
• Organism(s): Herbaspirillum seropedicae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-11-06 Released: 2024-01-31 
• Deposition Author(s): Magalhaes, M.T.Q., Pereira, H.M., Bleicher, L.
• Funding Organization(s): Brazilian National Council for Scientific and Technological Development (CNPq), Minas Gerais State Agency for Research and Development (FAPEMIG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.260 
• R-Value Work: 0.227 
• R-Value Observed: 0.229 

Literature

Crystal structure of hydroxyisourate hydrolase from Herbaspirillum seropedicae

Magalhaes, M.T.Q., Pereira, H.M., Bleicher, L.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 116.98 kDa 
• Atom Count: 7,880 
• Modelled Residue Count: 941 
• Deposited Residue Count: 1,096 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
5-hydroxyisourate hydrolase	A, B, C, D, E, F, G, H	137	Herbaspirillum seropedicae	Mutation(s): 0  Gene Names: uraH
UniProt
Find proteins for D8J1G5 (Herbaspirillum seropedicae (strain SmR1)) Explore D8J1G5  Go to UniProtKB:  D8J1G5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.260 
• R-Value Work: 0.227 
• R-Value Observed: 0.229 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.286	α = 90
b = 102.662	β = 94.38
c = 119.512	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-31 
Deposition Author(s): Magalhaes, M.T.Q., Pereira, H.M., Bleicher, L.

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Funding Organization	Location	Grant Number
Brazilian National Council for Scientific and Technological Development (CNPq)	Brazil	457851/2014-7
Minas Gerais State Agency for Research and Development (FAPEMIG)	Brazil	Universal APQ-01898-22

Revision History  

• Version 1.0: 2024-01-31
  Type: Initial release