Atomic structure of Salmonella SipA/F-actin complex by cryo-EM
Niedzialkowska, E., Runyan, L., Kudryashova, E., Kudryashov, D.S., Egelman, E.H.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Actin, alpha skeletal muscle | 375 | Oryctolagus cuniculus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P68135 (Oryctolagus cuniculus) Explore P68135  Go to UniProtKB:  P68135 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68135 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cell invasion protein SipA | H [auth B], I [auth C], J [auth D], K [auth A] | 261 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Mutation(s): 0  Gene Names: sipA, sspA, STM2882 | |
UniProt | |||||
Find proteins for P0CL52 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P0CL52  Go to UniProtKB:  P0CL52 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CL52 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP (Subject of Investigation/LOI) Query on ADP | AA [auth L] DA [auth M] L [auth F] O [auth H] R [auth I] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
PO4 (Subject of Investigation/LOI) Query on PO4 | CA [auth L] FA [auth M] N [auth F] Q [auth H] T [auth I] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
MG (Subject of Investigation/LOI) Query on MG | BA [auth L] EA [auth M] M [auth F] P [auth H] S [auth I] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
HIC Query on HIC | A [auth F] B [auth H] C [auth I] D [auth J] E [auth K] A [auth F], B [auth H], C [auth I], D [auth J], E [auth K], F [auth L], G [auth M] | L-PEPTIDE LINKING | C7 H11 N3 O2 | HIS |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.3 |
MODEL REFINEMENT | Coot | 0.9.8.1 |
RECONSTRUCTION | cryoSPARC | 4.0.2 |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM122510 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM114666 |