8U1B

C-terminal LRRK2 bound to E11 DARPin

• PDB DOI: https://doi.org/10.2210/pdb8U1B/pdb
• EM Map EMD-41806: EMDB EMDataResource

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens, synthetic construct
• Expression System: Spodoptera frugiperda, Escherichia coli
• Mutation(s): No 


• Deposited: 2023-08-31 Released: 2024-09-04 
• Deposition Author(s): Sanz-Murillo, M., Mathea, S., Dederer, V., Knapp, S., Leschziner, A.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Development and characterization of DARPins that bind to LRRK2 WD40 domain

Mathea, S., Dederer, V., Sanz-Murillo, M., Leschziner, A., Knapp, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 155.83 kDa 
• Atom Count: 4,584 
• Modelled Residue Count: 611 
• Deposited Residue Count: 1,376 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Leucine-rich repeat serine/threonine-protein kinase 2	A	1,194	Homo sapiens	Mutation(s): 0  Gene Names: LRRK2, PARK8 EC: 2.7.11.1 (PDB Primary Data), 3.6.5 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q5S007 (Homo sapiens) Explore Q5S007  Go to UniProtKB:  Q5S007
PHAROS:  Q5S007 GTEx:  ENSG00000188906

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
E11 DARPin	B [auth C]	182	synthetic construct	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.0
MODEL REFINEMENT	PHENIX	1.20

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-04 
Deposition Author(s): Sanz-Murillo, M., Mathea, S., Dederer, V., Knapp, S., Leschziner, A.

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Funding Organization	Location	Grant Number
Other private	United States	ASAP-000519

Revision History  

• Version 1.0: 2024-09-04
  Type: Initial release