8TMJ | pdb_00008tmj

Cryo-EM structure of CorA in complex with conformation-specific synthetic antibody C18 and 100 uM MgCl2, State MG0.1-2D


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Conformational ensembles of the magnesium channel CorA reveal structural basis for channel gating.

Erramilli, S.K.Nosol, K.Pietrzak-Lichwa, K.Schmandt, N.Li, T.Tokarz, P.Hou, J.Zhao, M.Perozo, E.Kossiakoff, A.A.

(2026) Proc Natl Acad Sci U S A 123: e2512532123-e2512532123

  • DOI: https://doi.org/10.1073/pnas.2512532123
  • Primary Citation of Related Structures:  
    8TMC, 8TMD, 8TME, 8TMF, 8TMG, 8TMH, 8TMI, 8TMJ, 8TMK, 8TML, 8TMM, 8TMN, 8TMO, 8TMP, 8TMQ

  • PubMed Abstract: 

    In prokaryotes, CorA is the primary influx pathway for magnesium, a critical divalent cation in cellular physiology and biochemistry. Mechanistic studies show that homopentameric CorA is regulated through an intracellular [Mg 2+ ]-dependent negative feedback loop, involving the asymmetric participation of individual subunits. To understand the connection between asymmetry and activation, we used single-particle cryo-EM to solve sixteen structures of nanodisc-reconstituted CorA. We utilized conformation-specific synthetic antibodies to stabilize subtle but significant conformational differences in the cryo-EM structures. Our results demonstrate that CorA exists as a set of conformational ensembles, where population size inversely correlates with intracellular Mg 2+ concentration. These ensembles include channels with a variety of pore conformations, both constricted and dilated, suggesting a spectrum of active CorA functional states. The ensembles connect asymmetric structural transitions in the cytoplasmic domain with conformational changes in the permeation pathway via an electrostatic network, ultimately controlling channel-gating events. We believe that these results establish a framework for understanding magnesium homeostasis in prokaryotic systems.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
sAB C18 Heavy ChainA [auth H],
D [auth F]
237Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
sAB C18 Light ChainB [auth L],
C [auth G]
215Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cobalt/magnesium transport protein CorAE [auth A],
F [auth B],
G [auth C],
H [auth D],
I [auth E]
373Thermotoga maritimaMutation(s): 0 
Gene Names: corA
Membrane Entity: Yes 
UniProt
Find proteins for Q9WZ31 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9WZ31 
Go to UniProtKB:  Q9WZ31
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UniProt GroupQ9WZ31
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM117372

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-12
    Type: Initial release
  • Version 1.1: 2026-02-25
    Changes: Data collection, Database references