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 8TFN | pdb_00008tfn

Structure of anti-TCRvbeta6-5 antibody in complex with the cognate TCR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 
    0.294 (Depositor), 0.309 (DCC) 
  • R-Value Work: 
    0.245 (Depositor), 0.261 (DCC) 
  • R-Value Observed: 
    0.247 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 8TFN

This is version 1.2 of the entry. See complete history. 

Literature

Innate TCR beta-chain engagement drives human T cells toward distinct memory-like effector phenotypes with immunotherapeutic potentials.

Vantourout, P., Eum, J., Conde Poole, M., Hayday, T.S., Laing, A.G., Hussain, K., Nuamah, R., Kannambath, S., Moisan, J., Stoop, A., Battaglia, S., Servattalab, R., Hsu, J., Bayliffe, A., Katragadda, M., Hayday, A.C.

(2023) Sci Adv 9: eadj6174-eadj6174

  • DOI: https://doi.org/10.1126/sciadv.adj6174
  • Primary Citation Related Structures: 
    8TFN

  • PubMed Abstract: 

    Clonotypic αβ T cell responses to cargoes presented by major histocompatibility complex (MHC), MR1, or CD1 proteins underpin adaptive immunity. Those responses are mostly mediated by complementarity-determining region 3 motifs created by quasi-random T cell receptor (TCR) gene rearrangements, with diversity being highest for TCRγδ. Nonetheless, TCRγδ also displays nonclonotypic innate responsiveness following engagement of germline-encoded Vγ-specific residues by butyrophilin (BTN) or BTN-like (BTNL) proteins that uniquely mediate γδ T cell subset selection. We now report that nonclonotypic TCR engagement likewise induces distinct phenotypes in TCRαβ + cells. Specifically, antibodies to germline-encoded human TCRVβ motifs consistently activated naïve or memory T cells toward core states distinct from those induced by anti-CD3 or superantigens and from others commonly reported. Those states combined selective proliferation and effector function with activation-induced inhibitory receptors and memory differentiation. Thus, nonclonotypic TCRVβ targeting broadens our perspectives on human T cell response modes and might offer ways to induce clinically beneficial phenotypes in defined T cell subsets.


  • Organizational Affiliation: 
    • Peter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, UK.

Macromolecule Content 

  • Total Structure Weight: 97.12 kDa 
  • Atom Count: 6,387 
  • Modeled Residue Count: 834 
  • Deposited Residue Count: 885 
  • Unique protein chains: 4

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
TRAV12-3204Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
TRBV6-5242Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Anti-TCRVb6-5 Fab heavy chainC [auth H]225Mus musculusMutation(s): 0 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Anti-TCRVb6-5 Fab light chainD [auth L]214Mus musculusMutation(s): 0 
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free:  0.294 (Depositor), 0.309 (DCC) 
  • R-Value Work:  0.245 (Depositor), 0.261 (DCC) 
  • R-Value Observed: 0.247 (Depositor) 
Space Group: P 2 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.588α = 90
b = 118.865β = 90
c = 173.021γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
xia2data scaling
DIALSdata reduction
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-08
    Type: Initial release
  • Version 1.1: 2024-05-22
    Changes: Database references
  • Version 1.2: 2024-10-23
    Changes: Structure summary