8T2B

Crystal structure of SCV PTE G18C mutant RNA in complex with Fab BL3-6

PDB DOI: https://doi.org/10.2210/pdb8T2B/pdb
NAKB: 8T2B

Classification: RNA/IMMUNE SYSTEM
Organism(s): Saguaro cactus virus, Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-06-05 Released: 2024-01-10
Deposition Author(s): Ojha, M., Koirala, D.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.18 Å
R-Value Free: 0.241
R-Value Work: 0.198
R-Value Observed: 0.202

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of SCV PTE G18C mutant RNA in complex with Fab BL3-6

Ojha, M., Koirala, D.

To be published.

Macromolecule Content

Total Structure Weight: 77.29 kDa
Atom Count: 5,235
Modelled Residue Count: 527
Deposited Residue Count: 538
Unique protein chains: 2
Unique nucleic acid chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
BL3-6 Fab heavy chain	B [auth A]	233	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
BL3-6 Fab light chain	C [auth B]	215	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Length	Organism	Image
RNA (90-MER)	A [auth R]	90	Saguaro cactus virus
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.18 Å
R-Value Free: 0.241
R-Value Work: 0.198
R-Value Observed: 0.202
Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.719	α = 90
b = 81.57	β = 90
c = 324.504	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHENIX	phasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2024-01-10

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	United States	NA

Revision History (Full details and data files)

Version 1.0: 2024-01-10
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.