8SZY | pdb_00008szy

Crystal Structure of Heterotrimeric Anti-TIGIT Fabs in complex with human TIGIT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 
    0.269 (Depositor), 0.265 (DCC) 
  • R-Value Work: 
    0.227 (Depositor), 0.223 (DCC) 
  • R-Value Observed: 
    0.229 (Depositor) 

Starting Models: experimental
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Literature

Biophysical characterization of PVR family interactions and therapeutic antibody recognition to TIGIT.

Diong, S.J.Jashnani, A.Drake, A.W.Bee, C.Findeisen, F.Dollinger, G.Wang, F.Rajpal, A.Strop, P.Lee, P.S.

(2023) MAbs 15: 2253788-2253788

  • DOI: https://doi.org/10.1080/19420862.2023.2253788
  • Primary Citation Related Structures: 
    8SZY

  • PubMed Abstract: 

    The clinical successes of immune checkpoint blockade have invigorated efforts to activate T cell-mediated responses against cancer. Targeting members of the PVR family, consisting of inhibitory receptors TIGIT, CD96, and CD112R, has been an active area of clinical investigation. In this study, the binding interactions and molecular assemblies of the PVR family receptors and ligands have been assessed in vitro . Furthermore, the anti-TIGIT monoclonal antibody BMS-986207 crystal structure in complex with TIGIT was determined and shows that the antibody binds an epitope that is commonly targeted by the CD155 ligand as well as other clinical anti-TIGIT antibodies. In contrast to previously proposed models, where TIGIT outcompetes costimulatory receptor CD226 for binding to CD155 due to much higher affinity (nanomolar range), our data rather suggest that PVR family members all engage in interactions with relatively weak affinity (micromolar range), including TIGIT and CD155 interactions. Thus, TIGIT and other PVR inhibitory receptors likely elicit immune suppression via increased surface expression rather than inherent differences in affinity. This work provides an improved foundational understanding of the PVR family network and mechanistic insight into therapeutic antibody intervention.


  • Organizational Affiliation
    • Discovery Biologics, Bristol Myers Squibb, Redwood City, CA, USA.

Macromolecule Content 

  • Total Structure Weight: 221.16 kDa 
  • Atom Count: 14,891 
  • Modeled Residue Count: 1,937 
  • Deposited Residue Count: 2,036 
  • Unique protein chains: 5

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CHA.9.543 Fab heavy chainA,
F [auth C]
228Homo sapiensMutation(s): 0 
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
CHA.9.543 light chainB,
G [auth D]
219Homo sapiensMutation(s): 0 
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
BMS-986207 Fab Heavy ChainC [auth H],
H [auth I]
241Homo sapiensMutation(s): 0 
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
BMS-986207 light chainD [auth L],
I [auth M]
216Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
T-cell immunoreceptor with Ig and ITIM domainsE [auth T],
J [auth U]
114Homo sapiensMutation(s): 1 
Gene Names: TIGITVSIG9VSTM3
UniProt & NIH Common Fund Data Resources
Find proteins for Q495A1 (Homo sapiens)
Explore Q495A1 
Go to UniProtKB:  Q495A1
PHAROS:  Q495A1
GTEx:  ENSG00000181847 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ495A1
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
PCA
Query on PCA
C [auth H],
H [auth I]
L-PEPTIDE LINKINGC5 H7 N O3GLN

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free:  0.269 (Depositor), 0.265 (DCC) 
  • R-Value Work:  0.227 (Depositor), 0.223 (DCC) 
  • R-Value Observed: 0.229 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.85α = 90
b = 216.91β = 95.97
c = 109.45γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
STARANISOdata scaling
XSCALEdata scaling
Cootmodel building
autoPROCdata reduction
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Structure summary