Download MendeleyCrystal Structure of ArnB Transferase from Klebsiella aerogenes (Lattice Translocation Disorder, P1 form2 )
Seibold, S., Lovell, S., Battaile, K.P., Cooper, A., Liu, L.To be published.
8SU6
Crystal Structure of ArnB Transferase from Klebsiella aerogenes (Lattice Translocation Disorder, P1 form2)
- PDB DOI: https://doi.org/10.2210/pdb8SU6/pdb
- Classification: TRANSFERASE
- Organism(s): Klebsiella aerogenes KCTC 2190
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2023-05-11 Released: 2023-05-24
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.175
- R-Value Work: 0.154
- R-Value Observed: 0.155
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | 387 | Klebsiella aerogenes KCTC 2190 | Mutation(s): 1 Gene Names: arnB |  | |
UniProt | |||||
Find proteins for A0A0H3FL22 (Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006 / CDC 819-56)) Explore A0A0H3FL22 Go to UniProtKB: A0A0H3FL22 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3FL22 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP (Subject of Investigation/LOI) Query on PLP | C [auth A], F [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| TRS (Subject of Investigation/LOI) Query on TRS | D [auth A], G [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| MPD Query on MPD | H [auth B] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| EOH Query on EOH | E [auth A], I [auth B] | ETHANOL C2 H6 O LFQSCWFLJHTTHZ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.175
- R-Value Work: 0.154
- R-Value Observed: 0.155
- Space Group: P 1
- Diffraction Data: https://doi.org/10.18430/M38SU6
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.172 | α = 62.96 |
| b = 64.131 | β = 76.67 |
| c = 67.252 | γ = 62.43 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-05-24 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700059C |
| National Institutes of Health/Office of the Director | United States | S10OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2023-05-24
Type: Initial release
